RNA id: AMCG00021614


Basic Information

Item Value
RNA id AMCG00021614
length 2958
RNA type mRNA
GC content 0.41
exon number 4
gene id AMCG00021614
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23061533 ~ 23067739 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGCAGGCAGGTGTCTGATTGCTTAATGAAAGTGAGCGAAAGTTGTTCCTTTTCCAGCGGTCTCATGACTCTGACGTCATGCGAAAGGCTTCAATAGAGAATGTTGAGATTTAGAATCTCTGTTTCTAATCGTTCGGCCCTTGTCGGTtcccattaaaattaaaatgtctttcgTGTTTTGCTGTTGCTCGTGTCCGGCTCATTCGGATGAAACTCATGTTTCAGAGGGTCCCACCGAAAGGCAGCCCTTGCTTCAGCCCCAGTCGGCAAGGCAGTTTGGCCGAGCGAAGGAAGATGGAAGGAAACGACGTGGAAGATTTCTTTCCAAGGTCACCGGAGTGCCTGAGCTCGATCGGCGCTTTACCGATATCGCCGACACGTTTAATCGCCAGCAGGAACAGTATGAAGCCATGACTGCCTGCGTTAGCCAATTAAAAGAGAGCTGTCAATGTAAAGCGGCGAACACGCTCTCAGACTGCCTGGGGAAAATGAAGGAAGACCAAGGCAACTATAACATCGGCATTGAGATGAAGGGCTACGACTTCTCCCTTGTCGTTCAGCCCGATGGGTTTCCTGCTGAGCTGCAGCAGGCCCAGGCCCAGGTCCAGATCCTCTGCAAGGCGTGCAAATCCACCCTGGCGGCTGGTACCAAACTGCAGGAGATGGTGAACTCGGTGCTGCAGAACCAGTTGGACCTCCTGCAGGCCGTGAAGGAGGCCCACCAGTCCCACCAGGAGCAGGTGCGTTTGGAGGCCAATCTCCAGGAGAACCTGGAGGAGACCAGGAGAGTGCAGCAGCTCGCCACGCAGTACAGGGACGAGGCCAGCGCTCTGCTCAGGGAGGTGGCACTCCTCGCTGGCATCGCCCTCTGAGTTAACAAGAATAAGACCACTTTTTACGTTATGATATATGAATATTGGCTCTTTTTCTAATGAGATAATAGAAAATCTGATCTGGTTTTTCAcagtttctgtctttctttacaCTGGCAAATCCCACAGGCTTGAATTCCAGTGagctctttctttttaattaatagctGACATTAATTCAGCTGCTCCATTCAAAAGAAATTGTGCACTTGAAGGTATTGGCCAGAGCTGGTGTTTTCTTCAAGGTATGCCACATTGACAAATGCATCCCACACTGCTTTTCAGACTTTCCAGAAAATGTCACCCAGATCCTGGCAAGTAAAATATGTTTCTAGGCGCGGGGAAATGAAAGGACTCTTACTGCCTCTTGTGTGCCTTTCATTGCCAGATTGAAAGTAGGTGTTTTCTAAATGGGAGCAGGTTCTCTTTTCATCGCTACAGACCCTTTGTGTGCCACCTTAGGAATGTTACACAGGAACCTCTGCATTATTCAACACCGGATGTTTTTGTGGGACTGAACAGTAAACATAAAAGGGTAGATCAGTATAGGGAATAAAATGCAAGAGGACCTATTTGTTCCACACTCATCCATCTCAATTCAGAATTCAGTTCCTTGTGAgggaacaatatatatatatatatatttttttttgttttttttgttttttgtttttctctctcagtttttcttcttccagaaTGAGCTGTGAATTGTGTTACTGTTATTTCTGTTCTCTGCTGTAGTCAGAATATAGAATTACTGGAAAAACATCTCCCTTAATATGGCTACACATTATTCCTACCTTCATGCGGCTTTAAACTAAGCCCTGGTGTAGCCGGCTTCCCTGCAGGCATTAAGCTCCTCTAGATACACATCAACAAACATGGCCGTCATTTTGTATTCTAGTAACACTGCTGGAGAGAACATTACACAGCCTGCTAGGACCTGAGAAAATGGCGTGAAATTTGTAATGTAGCGGGAGGGAGAGctgcaagttttgtttttgtttttttctgaatgtgCTACCAAAACATAGCTGGCAGCATTGTTCTGTCCTCAATGGTGACCTAAATTGGATTTGACAGAGTAAAGGTTGTGGTTGGGGGCTCATTGACTACAGCTTTGGCAATTGGCTCCAGAATACTAGAGCTGAGACAACAAAATTGTGGAATGGATGTTTCATACATTTCACTgccttgtttttcattaattgcAAGTCTAGCTGGCAACTGTGTGTGAGCACTTTAAACTGTGACTCCCATAAGAGAGAGAATATCTGGAATGAAGGATTGGAAAGGAAATTGTTTTTGCAGCGTATTGTGTCATTGTTGAGGCAAGTTCAGTGTTACTTgtctttttcttaaacatcttTGTATTTGAaggattcattcatttatttgtggaGTTATACCACCTCTACTTACAGTGCCTTTCCTGAattgaatgttttgttgttgttgtttattttcctcttgttttatattttctgctcGGGCACAGAGCCACAAGAACTGTATATTGAGATTTACCGTTTGTTGTTAACtaaattaaaagttaatataaatgtaaagtttATATTGCTCAAAGAACATACGAATCGCAGTTGTGATGCCACAGCTCTGATGGGTGAATTCATATGGCAGCATTTTCGCAGAAGCTCTGTAATGAATGAAAGCTTCTGTTGATGCACAACATACAGTTACATAAAGGCACAACTAAAAGTACTTTATAATTCTGTTTATATTTCAAGCTATTATATATATGCTTATAAAATAACTAATGTACTTGCTGTTTCTTACTGTACATAACACAAATACTATGCCTGTGATATTTGTCATTGcagacataataataaataaaaaataataataagtgccAAGAGATAAATAacacttataataataattataataaatggaGCCTCTGTAGGGAAGGCTGTAATACTGAGAGGCAAAGAAGAATATTGCaaactgtgaaaatataattaatatcattaattcaatttcaGTACTAATAAACCTAAagcatttattatgttttatctttAAACTCAATGGATGTTATGCACTTTTTGTCAAACAACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108813 lncRNA downstream 46751 23007394 ~ 23014782 (-) True G87181
TU108737 lncRNA downstream 370644 22690608 ~ 22690889 (-) True G87116
TU108699 lncRNA downstream 432642 22628599 ~ 22628891 (-) True G87092
TU108574 lncRNA downstream 873393 22130806 ~ 22188140 (-) True G86997
TU108491 lncRNA downstream 1276399 21784876 ~ 21785134 (-) True G86925
TU108827 lncRNA upstream 7895 23075634 ~ 23076015 (-) True G87193
TU108838 lncRNA upstream 21863 23089602 ~ 23091111 (-) True G87203
TU108868 lncRNA upstream 25849 23093588 ~ 23106188 (-) True G87218
TU108898 lncRNA upstream 129842 23197581 ~ 23197843 (-) True G87234
TU108931 lncRNA upstream 261586 23329325 ~ 23330344 (-) False AMCG00021630
AMCG00021615 mRNA downstream 12690 23026312 ~ 23048843 (-) True AMCG00021615
AMCG00021616 mRNA downstream 38732 23017658 ~ 23022801 (-) True AMCG00021616
AMCG00021608 mRNA downstream 79001 22967670 ~ 22982532 (-) True AMCG00021608
AMCG00021610 mRNA downstream 104867 22947324 ~ 22956666 (-) True AMCG00021610
AMCG00021609 mRNA downstream 124232 22916457 ~ 22937301 (-) True AMCG00021609
AMCG00021620 mRNA upstream 28741 23096480 ~ 23109751 (-) True AMCG00021620
AMCG00021622 mRNA upstream 59481 23127220 ~ 23127477 (-) True AMCG00021622
AMCG00021621 mRNA upstream 77618 23145357 ~ 23152321 (-) True AMCG00021621
AMCG00021619 mRNA upstream 89150 23156889 ~ 23160991 (-) True AMCG00021619
AMCG00021627 mRNA upstream 187200 23254939 ~ 23262180 (-) True AMCG00021627
TU108350 other downstream 1977963 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 2336653 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 2663750 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 2701278 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 2726229 20329422 ~ 20335304 (-) True G86600
TU108883 other upstream 87448 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 270512 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 2335911 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 2837705 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 3023515 26091254 ~ 26096784 (-) True AMCG00021700

Expression Profile