RNA id: AMCG00021615


Basic Information

Item Value
RNA id AMCG00021615
length 3331
RNA type mRNA
GC content 0.51
exon number 12
gene id AMCG00021615
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23026312 ~ 23048843 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGGGGTGTGGCCGTCTGATGTGAAGAAACCCCCAGCTCTGCTGCAGGAAGAGGCCGGTCCGGGTAACGAGTACAGATCATACACTTTCTACCAGTTGTGCTGCATTCACACtcgcacacccacacacacccagccTCACTCACAGCTTGTGTTCTCTGCATTGATTGGTGTTTTTCTTGGCTCGTTCAGCCCTATGGATTGGAGGAAAGGaaagcaaattacaaaaatgctGGACAACAATTTAGAAAACCTTACAAAGTGTTCTGCTTGTGTGTGAAGACTTTCTGTGCATTTCCTGTTGTCTTGGAGACTTGTTCCATGTAGCTAGCTGCCACGATACTTCCTCTCGCGTTAAAACCTACCAGAAGCCAATGCAGGAAGATGTTGGCAATGGACCAAGGGGCAGTGGAAGAGTGGTTGTCTGAATTTAAGACTCTTCCAGAGACGGCGATTTCCAGTTATGCTGCATCTTTAAAAGACAAGACCTCCCTGGTTCCAGCTCTGTACAAGGTGATACGGGAAAGTCAGAGCGAGCTCCTGGAGCCCGTGTGTCACCAGCTCTTCGAGTTCTACCGCAGCGGAGAGGCCGGGCTGCGGCGCTTCACCCTGCAGTTCCTCCCTGAGCTCATCTGGTGCTGCCTGTCCCTGGCGGCCAGCCGGGACCTTCACCGCAGCGGCTGCATCGAGGCACTGCTGCTGGGCATCTATAACTTGGAAATAGTTGATAAAGATGGCCAGAGCAAAGTGTTAACGTTCACAGTCCCATCCTTGTCTAAGCCCTCCGTGTATCATGAGcCATCGACAATTGGCTCTCTGGCTCTCACAGAAGGAGCTCTGGCTAAGCATGGTCTGAGCAGAGTAGTGTTCAGTGGACCACACCCCCAGAGAGAGACTTTCACAGCACAGAACAGGTTTGAAGTGCTGACCTTCCTTCTGCTCTGTTACAACGCGGCCTTAAGCTACATGTCCACAACTTCACTCCAGTCCCTCTGCCAGCTCAGCTCCAGGATAAGTACCTGTGGGTATCCCAGGCAACATGTTCGAAAATACAAAGGCATCAACACTAGAATGTCAGTATCTTCTGAGTTTCTTGTTCAGTTGATAACTGGCATTTATTATGCACTGTATAACGGAGAGGCGGACATGGCCTCTAAGGCTTTAGATGATGTTCTGtacagagctcagctggaactgTATCCTGAAGCTTTGTTGGTGGGCAATGCAATCAAGTCGTCCTTGCACGGAGGCGCACTGAAATCAAACAACGAAGGCACTCGGTGTATTCAGGTAGAAATCACTCCAACATCATCGAGAATCTCCAGAAACGCAGTCACCAGCTTGTCGATCCGTGGGCATCGCTGGAAGAGACACGAGTCTCCTGAGAACAGTATTGACGCCCCCGACTCAGGGGCCGTCCCCGTCCCCGAGATTAGCGTGACAGGGGTGAGCGGCGAGCGCGTGCTGAACGGGGAGATGCAGAGGCACAGAGCCGAGGGCGAGGCGCAGGGGGTACAGGAGCCGGGCTCCGACTCTAGAGCAGATGGCAAGAGCATGTCTGAAATCAGGAGGCAGAAGTCTCAGAGGAGACTAATGGAGGATGATGCAGTGGATTTGGCTTCCCCAGAGGAGCTGATGGAGATCTCGGAGGTCGATGAAGGGTTTTGTTCCAGGGCTGCTCCCAGCTGCAGTCCTCCGGTGATCGTGATCAGCAGCAGTTTTCCCAGCGGGCGGACGCCGGGGAAGAGCCAGCGCAGGGTGGGCGGCAGCCGGGccgggaaggagagggagggcgGGCCGGAGAGCTGCCGGGACCAGCTGTCTCGCAAGCAGGCCCAGCGTGCCATGAGCGAGAACCTGGAACTGCTGTCCTTGAAGAGACTCACGCTCACCACCAGCCAGTCTCTGCCCAAGCCCGGCAGCCTGAGCCTGGCCCGCACCGCCAGCGCCGTCTTCAGCAAGTCGTTCGAGCAGGTCAGCAACGTGTTTGGCGCCGGCAACCCCACCTGCGCCGCCAACGCCCCCCCATCCGAGACCAACCGCTACTCCGCCTGCAGCCTCCAGGAAGACCGGCTGGCCTATGTGGCGGAGCGGGCCGAGCACCTGAGCCCCAACCCCCAGCACAAGCAGCAGCGCTCACCCAGTATCAGCATCCAACTCTCCACAGACCTGTGAGGCCGCTGCCCGGAGCTGGGCGGGACTCGAGCGCCGGCACCACCATGGCTGCCCACTGGAATCGCTGCTGGGCGCGGAGCCACGTTTGGAGGAAAGCAAGTATTCGCCTGAACAAAAGTTGAAGAATTTCAAGTGCCCCTTCGTTGGGCAGCACTGAGCAATAACTGTGTATCGGCTTAAATACATCCTGTTTGGGGCTAATGTTCGTTAGCTTCTTTGGATAATAATCACTAAACCAGGCTGAAATAAGTAAACCAATATAGCTGCCCAACTTAGCCCTGTTTGGCTCCTCTCCAGATCTCCAGCCTGGTGCGGTATCCGTCAGAagaaccacacacacagactgtcctACATTGTGCGCTCTACAACGTTGTGTTTTCTGATTGTGTAACTGTGTTTGAATGAATGTGTTAagccactgtaaaataaagaaacaattgaaAAGGGGATATAAGGATAATCTTGTGTGGTGAaaggaagaggggaaaaaagcaaataataaattttaaaaagcagcacaaTATCTAGAGGTTACATTTAGAAACCAGGGGTGTAGGTTAACCCTCACGACCTTAGCCACCTTAATGATGTCTGGTTTTAAGATTTTAGACAAGCGATTTTGATTTTGTGGTGTTTATGtgcaattttaactgttttaatgcCCCCCTCCACTCGAATCcctttgtaacatttattttgcacacagAAACCCTACAGTCCACTGTTAGAAACCAAAAGCCTGTCCATGTTTACATGTCATTGTCATTGTGATCTAAGCAATACCGATAGTCAGACGCAAAGTCATGTCCAGTGTTTGAAGTTTCTATCCTAGTTTTAGCAAGTGCTTATTTTTTAAGTTCTAAAACGTTTTAAACCCTAATTAAgtccttgtattttgtatactgTACAAGCCTAACTTCCACTAAGGGGAGGTGTAGGTGAGCAGTATTAATGGCCATGGCATTTCATTGCTTCGTCAAAGCACTCTGTACAGTACATTGCACCAGTGTGACACGGCTATATTTGTGTGATGGCAAAAAGCTTTCCCATCGAAGATTAGCAAAATAGtcatgttcattttgttttcctactGTTTCTCATTATCTTTTTACCTTTTGTAAagattttctaaaataaaataaaactaaataaaaca

Function

GO: NA

KEGG:

id description
K21844 FAM126; protein FAM126

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108813 lncRNA downstream 11530 23007394 ~ 23014782 (-) True G87181
TU108737 lncRNA downstream 335423 22690608 ~ 22690889 (-) True G87116
TU108699 lncRNA downstream 397421 22628599 ~ 22628891 (-) True G87092
TU108574 lncRNA downstream 838172 22130806 ~ 22188140 (-) True G86997
TU108491 lncRNA downstream 1241178 21784876 ~ 21785134 (-) True G86925
TU108827 lncRNA upstream 26791 23075634 ~ 23076015 (-) True G87193
TU108838 lncRNA upstream 40759 23089602 ~ 23091111 (-) True G87203
TU108868 lncRNA upstream 44745 23093588 ~ 23106188 (-) True G87218
TU108898 lncRNA upstream 148738 23197581 ~ 23197843 (-) True G87234
TU108931 lncRNA upstream 280482 23329325 ~ 23330344 (-) False AMCG00021630
AMCG00021616 mRNA downstream 3511 23017658 ~ 23022801 (-) True AMCG00021616
AMCG00021608 mRNA downstream 43780 22967670 ~ 22982532 (-) True AMCG00021608
AMCG00021610 mRNA downstream 69646 22947324 ~ 22956666 (-) True AMCG00021610
AMCG00021609 mRNA downstream 89011 22916457 ~ 22937301 (-) True AMCG00021609
AMCG00021607 mRNA downstream 119273 22901585 ~ 22907039 (-) True AMCG00021607
AMCG00021614 mRNA upstream 12690 23061533 ~ 23067739 (-) True AMCG00021614
AMCG00021620 mRNA upstream 47637 23096480 ~ 23109751 (-) True AMCG00021620
AMCG00021622 mRNA upstream 78377 23127220 ~ 23127477 (-) True AMCG00021622
AMCG00021621 mRNA upstream 96514 23145357 ~ 23152321 (-) True AMCG00021621
AMCG00021619 mRNA upstream 108046 23156889 ~ 23160991 (-) True AMCG00021619
TU108350 other downstream 1942742 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 2301432 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 2628529 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 2666057 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 2691008 20329422 ~ 20335304 (-) True G86600
TU108883 other upstream 106344 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 289408 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 2354807 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 2856601 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 3042411 26091254 ~ 26096784 (-) True AMCG00021700

Expression Profile