RNA id: AMCG00021617



Basic Information


Item Value
RNA id AMCG00021617
length 861
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00021617
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23000489 ~ 23003768 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTACACCTTCAGGTGTCGTCCTTTAAAGCGCTCCATAACAAGGGAACATGATAACCAGAAGAGTTTTCAAACACACCCTAGGAAACCTAAACCTCTCAAGCCCTATAAGCCCACTGAGCCCAACGCATGGCGCATTCGTCAAGATGCCGTCCACGCAAAcactgaCTGGCAGCTTCTGTTTCTTTCAGGACTCCCTGCATGTGTCATGGTGTGGCTGTCAGCTGCAGCATCACTGATCCGAGCTGCTCCTTTCTTGGACCCCGCTGCTCTGCTCTATGCGGAGATCTCTGGAGACGAGAGCGCAGAGTCAGGCAGCTCCGCTCTCACCCCGCTCTCCTCCAAATGGGAATCCCTGGCGCAGCTCCTGGTGAGCGACGTCTCCAAGCTCCAGAAACAGCAGGATGATGAAGTATTTCAGGCATCTATTGAACGTTTGCAAACGTTTGGAAGCAACCACTTAACCATGCCACGCATTAAACAAGAACATGGCTGTTTTAAAACTGGGTTCAACAAAGAGAGATGTTTACACACCGTGGCCACTGGACTTCAGGAGTACAGCATCTATATGGAGTACGTGGACGAGGTGTACCCCCTAAAGAGTGAGGTGCAGCACGTCAAATACCGCACGAGGACCTTAACCGATGTGGTGATGAAGAGTATGAAGAATCCATTGAGCGTAGAGGAGCTGGACTCAGAGCGCAAGGAGCTGCTCCTGGGGGTCCTGCCCACGGAGAGCAAATGGGAGCGGAACACTGCGGTGCACTTCATCCTCAAGGAGTTCCACCACTTCGTGCAGGACACCTTCCGGGCCATCCGCCACATGAAGTGCCAGAACACGCGAGCCAAGGACTGCGAATGA

Function


GO: NA

KEGG:

id description
K05405 IL6; interleukin 6

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU108724 lncRNA upstream 289369 22706899 ~ 22711120 (+) False AMCG00021602
TU108698 lncRNA upstream 371603 22628620 ~ 22628886 (+) True G87091
TU108691 lncRNA upstream 411564 22587214 ~ 22588925 (+) True G87086
TU108617 lncRNA upstream 693601 22303566 ~ 22306888 (+) True G87030
TU108605 lncRNA upstream 719031 22271537 ~ 22281458 (+) True AMCG00021591
TU108800 lncRNA downstream 3626 23007394 ~ 23014831 (+) True G87168
TU108852 lncRNA downstream 141236 23145004 ~ 23146510 (+) False G87215
TU108854 lncRNA downstream 141236 23145004 ~ 23191753 (+) False G87215
TU108853 lncRNA downstream 145246 23149014 ~ 23152348 (+) True G87215
TU108897 lncRNA downstream 193853 23197621 ~ 23197869 (+) True G87233
AMCG00021606 mRNA upstream 98964 22901304 ~ 22901525 (+) True AMCG00021606
AMCG00021605 mRNA upstream 100044 22842792 ~ 22900445 (+) True AMCG00021605
AMCG00021604 mRNA upstream 160971 22833035 ~ 22839518 (+) True AMCG00021604
AMCG00021602 mRNA upstream 289345 22697164 ~ 22711144 (+) True AMCG00021602
AMCG00021596 mRNA upstream 424642 22540922 ~ 22575847 (+) True AMCG00021596
AMCG00021613 mRNA downstream 65092 23068860 ~ 23074075 (+) True AMCG00021613
AMCG00021612 mRNA downstream 71795 23075563 ~ 23080630 (+) True AMCG00021612
AMCG00021611 mRNA downstream 79532 23083300 ~ 23088905 (+) True AMCG00021611
AMCG00021618 mRNA downstream 85764 23089532 ~ 23092868 (+) True AMCG00021618
AMCG00021623 mRNA downstream 153111 23156879 ~ 23166512 (+) True AMCG00021623
TU108421 other upstream 1764409 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 1769001 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 1769001 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 1835457 21158624 ~ 21165032 (+) False AMCG00021551
TU108358 other upstream 1891121 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 1170741 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 2273008 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 3148300 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 5774547 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 6057119 29060887 ~ 29065339 (+) True G88276

Expression Profile