RNA id: AMCG00021618


Basic Information

Item Value
RNA id AMCG00021618
length 1625
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00021618
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23089532 ~ 23092868 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagacttcctGCAAGTTGACCAATAGGACGGCAGAGGGCGAGACTTCCTTGCTCTTGACCAATAGGACGGCAGAGGGCGAGACTTCCTTGCTCTTGACCAATAGGACTTCAGAGGGCGAGACTTCCTTGCTCTTGACCAATAGGATGGCAGAAGGTGAGACTTTCTTCCTGTTGATGGAAAGAACACATGTTTGAAGTGGAATTGACTGAAAGACAGACTAACACTATGAATTCTGTAGCTGTTCTTAAGTGGACCAAAAGACTGCGTCCAATTATACATACGAACAACTTAACCTGTTATAATGGCCGAATGTTTGTGCAAAACCACGCTTTGCATCAACGCATTACAGCACATGGACCTTTTCCTTTACTCGTCCGACGATGGAGGTGCTTTTCCAGTGTGGGCAGCTCTGTGTCGGTAAAGAGGCTTTACGCGGATTTTCAAGGTCGCACAGACGCGTCGAGTGAGTTCAGCACTGGCGATTTAGACGTGAACGAAGTGGATTATTGGACAAAAAGCACGGGTCCGGATCCTGTTTTCAGTATCGATATCCTGGTGGCCCTTCTGCGGCAGGAGAATGCGGCCGATGTCTGTGTTATTAAAGTGCCGCAGACCATGAAGTACGCCGACTACTTCGTGGTAGTAAGTTGTTCCTCAACGAGGCACCTGCGAGCCATGGCCCACTATGCGATCAAAGTGTACAAGCACATCAAGGGGGACGACAACCCACACGTTCGCATCGAGGGCAAGGATTCAGATGACTGGTCGTGCATAGATTTTGGGGATATTGTGGTTCACTTCATGCTGCCGGAATGCAGAGAGTTATATGAGCTGGAGAAGCTGTGGACCCTGCGATCCTATGACGAGCAGTTGGCCAGCATCCCCCCCGAAAGCCTCCCCGACGACTTCATCTACAGCGCAGAGGTCAGCAGCGACGGCGTCAAGTGAGACGTCTGGAGCCTGAGACTGTTGTGAAGAGAATTTCTATAGTGAAGCGGCCTGTTGGAGACCCGGAgtggacccccccccccccaaaccacAGAGGGATTTCAGAATGCCACTTTTATTTGGGTTTTAATTTACgggtgcttttttaaatgtgaatttacTAGCAAAGTGAAGTAACATTTACAATATCGGCAACAGAGCTAAAATGTCAAGCTCTTGTACATATTAAACTGGTTTTATTCATACAGCAGTTGCATTTGTATAGTGAAAATGGCTCCTGATGACTAACCAATCTAACACACAGATACAGTCTCTTGTCCAGCCAGCTGTGAAGAACAGGGGGTTTGTGAAAGAACCTTCAGTTTAAAGTTCTAAATTGATTAGTGCAGTTATTGATTGGGTTTGTATAGGATAGTCTGAGCCACTACACAGTATACCGTTAATTACATTCTgatcatgtaaacaaaaaaagtgtggCTGAATTTAGGTTTATCATAATCCCGGAGCGGAGTCTCAGACAATCTCTTCCAAACCTTGTCAAGGTTTTCCACACAGCTGGAGAATAACGGATGGGACTTGTCATATGTGCCAAGGCTTTGAGTCAATGTGTAGAAGTGAACTAAACTGAACTGGAGAGTTAAGtaatggattttaaataaaattgaatttaattaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108800 lncRNA upstream 74701 23007394 ~ 23014831 (+) True G87168
TU108724 lncRNA upstream 378412 22706899 ~ 22711120 (+) False AMCG00021602
TU108698 lncRNA upstream 460646 22628620 ~ 22628886 (+) True G87091
TU108691 lncRNA upstream 500607 22587214 ~ 22588925 (+) True G87086
TU108617 lncRNA upstream 782644 22303566 ~ 22306888 (+) True G87030
TU108852 lncRNA downstream 52136 23145004 ~ 23146510 (+) False G87215
TU108854 lncRNA downstream 52136 23145004 ~ 23191753 (+) False G87215
TU108853 lncRNA downstream 56146 23149014 ~ 23152348 (+) True G87215
TU108897 lncRNA downstream 104753 23197621 ~ 23197869 (+) True G87233
TU108961 lncRNA downstream 396213 23489081 ~ 23584336 (+) False G87288
AMCG00021611 mRNA upstream 627 23083300 ~ 23088905 (+) True AMCG00021611
AMCG00021612 mRNA upstream 8902 23075563 ~ 23080630 (+) True AMCG00021612
AMCG00021613 mRNA upstream 15457 23068860 ~ 23074075 (+) True AMCG00021613
AMCG00021617 mRNA upstream 85764 23000489 ~ 23003768 (+) True AMCG00021617
AMCG00021606 mRNA upstream 188007 22901304 ~ 22901525 (+) True AMCG00021606
AMCG00021623 mRNA downstream 64011 23156879 ~ 23166512 (+) True AMCG00021623
AMCG00021624 mRNA downstream 75713 23168581 ~ 23180173 (+) True AMCG00021624
AMCG00021626 mRNA downstream 93404 23186272 ~ 23203415 (+) True AMCG00021626
AMCG00021625 mRNA downstream 120503 23213371 ~ 23253206 (+) True AMCG00021625
AMCG00021628 mRNA downstream 251022 23343890 ~ 23369320 (+) True AMCG00021628
TU108421 other upstream 1853452 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 1858044 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 1858044 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 1924500 21158624 ~ 21165032 (+) False AMCG00021551
TU108358 other upstream 1980164 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 1081641 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 2183908 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 3059200 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 5685447 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 5968019 29060887 ~ 29065339 (+) True G88276

Expression Profile