RNA id: TU108883


Basic Information

Item Value
RNA id TU108883
length 2769
RNA type TUCP
GC content 0.39
exon number 3
gene id AMCG00021619
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23155187 ~ 23160991 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAAAGGGCTGGGTTATATCGGCAGCTCTGGAGGCATCGACGAGCCCTGCACACATCCGCGGACTCGTACGTGTAGACGGTGAAACACGGTCATCGGAGCGAGAGGCGAAGGCAAACGGCACCCGGTCCTCGGTGAAGCGGCATGGAGGGGCAGGCGAGCGGCTCTCGCTGAATGCCCGTCCCCGGCGTCGCGTCTGCGGCTGTGAGTCCAGATGCGGTGCATGAAGAGggtaacatttcttgaaatgtggaaatCCAATGCAACATCCTGTGGCAACTGACCAGAGACCTATGCATGGCAACGCAATCCTCGCCTCTGACAAGCACTTGAACACCAGGCTTCATGGTTGGATACCAGGAAATAAACGGGTTCTTTGGTTGTACTTGTAGAACATCATGCTTGGACCTCTGCTTCGAAAAAACATGTCCCAGAAACTAAGTATACTGTTGCTGATCTTTGGCTTTATCTGGGGCTTGATGCTCATGCGATACACTTTTCAGCAGCCCAGACACCAAAGCAGTGCTCAACTGCGGGAGCAAATCCTTGACCTTAGCAAGAAATACGTCAAGGTGCTGACCGAGGAGAATCAGAACTCAGATGGGTTACACGGCACATCCATGGCTGGATACGCTGATCTCAAGCGGACCATTGCAGTCCTACTGGACGACATTCTGCAGCGCCTGGTGAAGTTGGAGAGCAAAGTGGATATTGTAGTGAATGGCTCCATGACAAATGCCACAAACAGTGTCGGGGGCATCCCACCACCTGCCATCTCCAACAAGCATccagaaaaagcagaaaacgGGAGATAGCAAGTTTGCAGAGCGCGTGGAGGTGGGGGACAGAAGGGTCTTAAAATGCTGATTCTGAAAACATTGCATCGTAGAATTGCCTGTGCTTGTTGCTCATTAGCAGCTTCTCAAAGGtattttaatcatgttttttcgTTGTCGGGCAACATTTCATAGAGAATTTTCACCATTTGATTCAGTTTTTTATTCTAAACAATGTATATAgctaattatatttaaaatgttatgttgtagtttttttttttttttttttttaaatgaccaaaCTGAAGAAAAGCAGATGTAATATTTGTTTGGATGGAGTTATAagaactttatatatatactaatcaatatatatgtatgtgtacatatctGTTTTACTTGAGTGCTTTACTTGACTGGTCATGAAATTGTTCTTTCAGCATTaagcattttctacattttactaaaacagtatatGATCTAGCTTTTGACatttacaatgtacagtaaattaTACAAGAAAAAACCCAAAGAATGTTATTTGCACTGTATGTGaagactaaataaatgtatttgtcttagATTAACcaatgagatatatatatatatatataaaatcgaCTAGAATGTAAGATTCATCAAGCTGGAAAATCAATCCTTGATCTCTCTCATGCATgatatagcctacatattatACATCTCTTGTGTAAAATGCTTTGGacaaaaaatattgcttttaagattttagattttaaaattactttaaaaggaaacgtcatgaaaattattttaaacctatCGCCTTTTATTAAGACAGGAGCTATCACTGACTTCTGAACAAATAAGccttaaaaacattatattttcttgttgtttttttaataatacaaatgccaTCGAGGGATTTATGAATGAGTAAATTGGCAGTATAACAAGGTCCTGTTGTTTTAAAGTGTCATTGGTTAGTGACCCAATACAACCTTAAGCTTGGGTTGGTCAGAACTAGACTGAAGGATAAAATATTTTAGGATGACATATGCAAATCCCACTAACTTTTTGCacctgttattttgtatttatatgtagaAATGTGCAATAGCAGTAGGACTCTGAAGAGTCGTTTTTTTTGGCAGGAAGTAATCCCCTCCAGTTTGAAGCCAAGTGCACAAAAGGGTCATCGCACATGTCCTTGCTGGTGCTTTTACACGTCTGTTCACACAGGTTTAGCTTGTGTGAAGATCAATATCACTGCTCCTCACACCAATGACTGAGTAAAATGTAATAGGAAATGTCACAATCCACCCTTCGTGTAGCTTCTAGGAAGTTGCAagctttttaatgaaaatagtgGGGATGGGTTCAAACCATACATGAAATGTGCCGTAGGTTATTTGACTTGTCTTATCtctatattgtacattttaagagTGCTGGGATGTAGATgagtgttttttggtttgtgtgtatTGTAGACCTCTCTGAAAAGGCTGCAAAGCATTCTGGTACACTGGGTTACACACGTTTTGTTTTGATGATCGGAAAAACATGTCCCTGCCATCATTGTTTCTTAATGTCCACTCAGTGTGTATGCAGACAATTAAGACttatcagtttcattttttatttttttttaatcaaagtgtGAACTGTGTTTCTCCTTGGAAATGTCTTTAGAAATGTGActtgttttacttttcaaaCGATGCTTTCTGAACACTCCTACCTATATCATTGATACTGGTGTTTCCCCGCAGATGTGTGTTACAGAAAACATCCAAATGTAACATTAAAGATTCACTATACTTGAAATCTGTACTTGAGGAAACAATTACAATGTAACTTTTTCTGGCATAGTTACAGGTTTtattctttctattttctttgtcatatttaatttgtttatttcaacatcccaattaatattgtatgatttaaaaatcaCTGCTTTTTACAGTACTGTTGTGCTTGTCATGAAATATGGAACTCATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108868 lncRNA downstream 48999 23093588 ~ 23106188 (-) True G87218
TU108838 lncRNA downstream 64076 23089602 ~ 23091111 (-) True G87203
TU108827 lncRNA downstream 79172 23075634 ~ 23076015 (-) True G87193
TU108813 lncRNA downstream 140405 23007394 ~ 23014782 (-) True G87181
TU108737 lncRNA downstream 464298 22690608 ~ 22690889 (-) True G87116
TU108898 lncRNA upstream 36604 23197581 ~ 23197843 (-) True G87234
TU108931 lncRNA upstream 168348 23329325 ~ 23330344 (-) False AMCG00021630
TU108938 lncRNA upstream 210213 23371190 ~ 23372192 (-) True G87269
TU108952 lncRNA upstream 272239 23433216 ~ 23481900 (-) True G87282
TU108957 lncRNA upstream 321995 23482972 ~ 23488212 (-) True G87287
AMCG00021621 mRNA downstream 2866 23145357 ~ 23152321 (-) True AMCG00021621
AMCG00021622 mRNA downstream 27710 23127220 ~ 23127477 (-) True AMCG00021622
AMCG00021620 mRNA downstream 45436 23096480 ~ 23109751 (-) True AMCG00021620
AMCG00021614 mRNA downstream 87448 23061533 ~ 23067739 (-) True AMCG00021614
AMCG00021615 mRNA downstream 106344 23026312 ~ 23048843 (-) True AMCG00021615
AMCG00021627 mRNA upstream 93962 23254939 ~ 23262180 (-) True AMCG00021627
AMCG00021629 mRNA upstream 104773 23265750 ~ 23303746 (-) True AMCG00021629
AMCG00021630 mRNA upstream 168650 23329627 ~ 23332968 (-) True AMCG00021630
AMCG00021634 mRNA upstream 334048 23495025 ~ 23498563 (-) True AMCG00021634
AMCG00021637 mRNA upstream 505616 23666593 ~ 23667210 (-) True AMCG00021637
TU108350 other downstream 2071617 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 2430307 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 2757404 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 2794932 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 2819883 20329422 ~ 20335304 (-) True G86600
TU108932 other upstream 177274 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 2242673 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 2744467 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 2930277 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 2991128 26152105 ~ 26154375 (-) True G87871

Expression Profile