RNA id: AMCG00021622


Basic Information

Item Value
RNA id AMCG00021622
length 258
RNA type mRNA
GC content 0.61
exon number 1
gene id AMCG00021622
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23127220 ~ 23127477 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATAAGCTGTATATCGGTAACTTGAGTGAGGACGCAAGCCCGGTGGAGTTGGAGAGCCTCTTCGAGGAGTGGAAGATCCCCCACGCCGGGCCGTTCCTCGTCAAGGCTGGCTACGCGTTCGTGGACTGTCCGGACGAGAAGTGCGCTATGAAGGCCATCGACGCGCTCTCAGGTGAGGGGCCAGCGCCGGCCGGGGACCCGGGGGGCTTTGACGGGGCTCTGCGTTTTCACGCGTTTTACGGCCGTGGAAAATAA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108868 lncRNA downstream 21032 23093588 ~ 23106188 (-) True G87218
TU108838 lncRNA downstream 36109 23089602 ~ 23091111 (-) True G87203
TU108827 lncRNA downstream 51205 23075634 ~ 23076015 (-) True G87193
TU108813 lncRNA downstream 112438 23007394 ~ 23014782 (-) True G87181
TU108737 lncRNA downstream 436331 22690608 ~ 22690889 (-) True G87116
TU108898 lncRNA upstream 70104 23197581 ~ 23197843 (-) True G87234
TU108931 lncRNA upstream 201848 23329325 ~ 23330344 (-) False AMCG00021630
TU108938 lncRNA upstream 243713 23371190 ~ 23372192 (-) True G87269
TU108952 lncRNA upstream 305739 23433216 ~ 23481900 (-) True G87282
TU108957 lncRNA upstream 355495 23482972 ~ 23488212 (-) True G87287
AMCG00021620 mRNA downstream 17469 23096480 ~ 23109751 (-) True AMCG00021620
AMCG00021614 mRNA downstream 59481 23061533 ~ 23067739 (-) True AMCG00021614
AMCG00021615 mRNA downstream 78377 23026312 ~ 23048843 (-) True AMCG00021615
AMCG00021616 mRNA downstream 104419 23017658 ~ 23022801 (-) True AMCG00021616
AMCG00021608 mRNA downstream 144688 22967670 ~ 22982532 (-) True AMCG00021608
AMCG00021621 mRNA upstream 17880 23145357 ~ 23152321 (-) True AMCG00021621
AMCG00021619 mRNA upstream 29412 23156889 ~ 23160991 (-) True AMCG00021619
AMCG00021627 mRNA upstream 127462 23254939 ~ 23262180 (-) True AMCG00021627
AMCG00021629 mRNA upstream 138273 23265750 ~ 23303746 (-) True AMCG00021629
AMCG00021630 mRNA upstream 202150 23329627 ~ 23332968 (-) True AMCG00021630
TU108350 other downstream 2043650 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 2402340 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 2729437 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 2766965 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 2791916 20329422 ~ 20335304 (-) True G86600
TU108883 other upstream 27710 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 210774 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 2276173 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 2777967 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 2963777 26091254 ~ 26096784 (-) True AMCG00021700

Expression Profile