RNA id: AMCG00021625


Basic Information

Item Value
RNA id AMCG00021625
length 4009
RNA type mRNA
GC content 0.50
exon number 17
gene id AMCG00021625
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23213371 ~ 23253206 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATTCCCAGCAGTGGCTAGTGGAGCTGTGCCAGGCTGCCGTTGTCCAGACCTGCTGCAGAGGCGATATCCACCGACCGTTCATTGTTCTCTGGGGCTTCACCAAGGCGCAGTATATCAGCACGCCTCCTTACTTAAACTGCTCCTCATCCCTCATCGACACTCTGCTGCACACCAGGGAATGTGAACTGGGCCAAAGTGGAATTAAATTCAACACAGCCCTGCAGGGAGCCCAGTTCTCATCTGTGAAGGTTCCCCTGTGTTCCTCTGCTGTGACCGATGAGAAGTGTGCAGTAGGTGTCTGTTGGAAGACCACGGCTGCCGTTCTGACGGGCGACACTGCCTGGCACAGCTCTGTGGCAACCTGCAGCTACCATGAGTTCAGGAGAGTTTCTGTGCACATGGGGGAGCCTGGATTGAGCTTTCACACAACGCTGGGCACACTGCTGCTGTCATCACTCACCCAAGCTGgctctcctctctgggcagtCGAACCGGAGGACTCCCACGAGCAATTAGTCAGATCGATCTGTGGACAAGGAGCCGTCCAGAGAAAAGAGCGCACATCTATTCTGTTCCTAGCGATGGTTTTCTTAGTCGAAGATGGATATCCAAATGGTTTAGATTCATCTCCTGAAGGAGACAGTACTTCGTCAGAGGAAGGAGCCAATACTTCAGTAGCAATGCAACAGGTTCTCGATAACCTCAATGAGCTGCCCACCACCACCGGGGCCAAGAACATAGACCTCATCTTCCTCCGGGGCATCATGGAGAGCCCCATCGTCAGGTCCCTGGCAAAGGCTCACGAGCGGCTGGAGGATGTGAAACTGGAAGCGGTGAGCGACAACAACATGGAGCTGGTCAGCGAGATCCTCGATGACATCAGCCCTCTGACCAGTAAGGACGACAGCGCTGCGGAGCTGTCCCGCATCCTCAAAGAGCCGCACTTCCAGTCGCTGCTCGAAGCTCACGATATGGTGGCATCGAAATGCTATGAACCCCCTCAGTCCAGCTCTGAAGTCAATAACGACACCGTGGCCCCCAACCAGCTGCTCCAGGCAGATGCCGGGGTGACGTTCCGGGTGGAGAGCAATGACCTGGTGATCGCACGCATCCTCCATGGGGGCATGATCGACCGGCAGGGCCTGTTGCACGTGGGCGACGTCATCAAGGAGGTCAACGGCCGTGACGTGGGCAACAATCCCAAGGAGCTGCAGGAGATGCTGAAGAACTGCAGCGGCGGCATCACGCTGAAAATCCTCCCCAGCTACAAGGACGCCCCGCCACCGCAGCAGGTCTATGTAAAACCTCATTTTGATTATAATCCAGGCCACGACAATCTAATCCCTTGCAAAGAGGCCGGCCTGGCCTTTTCCCGGGGGGACATCTTGCAGATCGTCAACAGAGAAGACTCCAACTGGTGGCAGGCCTGCCATGTGGTGGGAGGGTCGACCGGACTCATCCCCAGCCAGTTCCTGGAGGAGAAGAGAAAAGCTTTTGTGCGACGAGATTGGGAAGGCTCGGGAGTCCTGTGTGGAACGATGAccgggaagaagaagaaaaagatgatGTATCTCACGGCCAGAAATGCAGAGTTTGACCGCCACGAGCTGCAGATCTACGAGGAGGTCGCCCGGATGCCCCCCTTCCAGAGGAAGACCCTGGTGCTGATTGGGGCGCAGGGGGTCGGCCGCCGGAGCCTGAAGAACCGGCTGATCGTGCTGAACCCCACAAGGTTCGGAACAACGGTGCCCTTCACCTCGAGGAGGCCGCGGGAGGACGAGAAGGACGGGCAGTCGTACCGGTTTGTGACGAGGGTGGAGATGGAGGCGGACATCAAAGCCAGCCGGTACCTGGAGCACGGAGAGTACGAGGGCAACCTGTACGGCACCAAGATCGACTCAATCCATGAAGTGGTGGAGACCGGGAGGACGTGCATCCTGGACGTGAACCCTCAGGCTCTGAAAGTCTTGAAGACTTCGGAGTTCATGCCGTACGTGGTGTTCATCGCCGCCCCGGAGCTGGACACGCTGCGGGCGATGCACAAAGCCGTGGTTGATGCCGGCATAACTACCAAGCTTTTGACAGACACAGACTTGAAAAAGACGGTGGACGAGAGCGCTCGGATTCAGAGGGCCTACAGCCACTACTTTGACCTGGCCATCGTAAATGACAATCTAGACAAAGCCTTTGAGAAACTGCAGGCTGCGGTGGACAAACTGCGCTCGGAGCCCCAGTGGGTCCCCGTCAACTGGGTCTACTGAGGGCCGGCCGCGGGGGTCCGCAGGGCGGGGTGCGGAGGACGGACCCCCGGAGGATGTGCGGACCTCCCACCCCCCGACTCCCTGGTACACTGCGATGACTTTTTCTACACAAATTGAAGGGAAagtgtacttatttattttaatttttataactttttacAGAATCTTTCTATTCATATCGACTAAGTAAAATCACGACCACGACGACAAAGACGACAAAACCGgagccatgttttttttttttttttgttcgtttgtttgttttgtaccaCAATTGGGCCCAACTGAACCTGAAATTGTGATCCGACAAAAGGACGAGACTGCTTGAgagattttaatgtatttattcagaagTCCGAGATGCTCAGAAGCAATTGCTCATCCTGAGGTGAGACACTACTCTTCATTGACATAAATGAATCGtatcattaataacaataataacaacgaGTTTCTCAACAGAGAAGTGTTTACATGCTAGCAATACCACAGTAATTGCAACGCCACTTTTTGTTAATGCTCTGTGTGAAATGTGACCgtaggttttcttttctgttcgcCATCGTGTTTTTCTCATTTCCTCCTTaggatatctctaaataaaccCCCAGTGTAATCCCATTTGACACCCAGCTGCTTTGAAACCGCTGTAGttacttttaaattgatatCCATTAATAGTGGAATCGTAGTTTTTAGCTTCATTTTCTGAGAGGCGAGAGCTATATCTGTACCCCTCGAGAATATTAAAACcccgtctctgtctgtctctgtattttctGTTGGTGATTTTAGTTGATAGGTTTTAGGAAGAAAATAAGTTTGTGTTATTTCGATTTTTAAAGTagaatttttgttttgcttctacTGTTCTAAAAAAGAATGTTCCTTGAAGAACAAAGTGCATCCGGAATGTTTCTGCTTCTGATGCGACAtattgtgattgtgtttgtttttcttcccgtATTCTGGAAGTTTGGCGTGTGTGCTTGACGGCTGACTGAAAAGACACTGAAGGATCCtgggatgtttaaaaaaaaaaaaaatggtgtccATTGACACTTGGGAGCAGCTGTGAACCCAGTTTGTTTTTGGGGCGTCTTATACTCTGAAAAATACCAGTAAGAGTTCTCCATGTAGAGCTCTTACTGGTATTTTTCGATATTAACTTCTGCTGTATAAATTCTGAAGTTCCCTTGCATTTATCCCGAAAATGAACTTCAATAAGTAGGCAATCGAAGGATACCCAACATccctttttttacttttacattccATCACTAGTCATTTAGTTGTTGACCAACCcctggggaaagaaaaagtaCTCGTTTAGTGGTGTATGGCTGAGTTGTGtagcattgtgttttttttttcagcagcacAAGCatggtacaaaaataaatattctgtcAAGACCCCCCAGGCAGTTTGCCTGTGTCAACAAAAGCGATTAAATGCGGAAGTGGCCCCTACTGTCTCATCGCAAACCTCCATGTGTCCCCTAACCATTATGATGTGTTTCGAGTAGTattccctcccccccaccctacACTTAAAACAAGGAATGGTGCTGCTTTTCCCGACATTACTTtataggaaacaaaaacactttggtGTAAGGGGGGGGGAAAGGACTGTGCCATATCTTATTGTACATCGTGAATCGGCCATGGGTCTGTTTGGTCCACGATCTCTAACACTGCCATCACAAATAAAGTTcagtatataaatatctatattaatA

Function

GO: NA

KEGG:

id description
K24048 MPP2_6; MAGUK p55 subfamily member 2/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108897 lncRNA upstream 15502 23197621 ~ 23197869 (+) True G87233
TU108854 lncRNA upstream 21618 23145004 ~ 23191753 (+) False G87215
TU108853 lncRNA upstream 61023 23149014 ~ 23152348 (+) True G87215
TU108852 lncRNA upstream 66861 23145004 ~ 23146510 (+) False G87215
TU108800 lncRNA upstream 198540 23007394 ~ 23014831 (+) True G87168
TU108961 lncRNA downstream 235875 23489081 ~ 23584336 (+) False G87288
TU108962 lncRNA downstream 236101 23489307 ~ 23492092 (+) True G87288
TU108992 lncRNA downstream 420686 23673892 ~ 23678603 (+) True G87313
TU109000 lncRNA downstream 434119 23687325 ~ 23692148 (+) True G87321
TU109088 lncRNA downstream 776638 24029844 ~ 24032117 (+) True G87402
AMCG00021626 mRNA upstream 9956 23186272 ~ 23203415 (+) True AMCG00021626
AMCG00021624 mRNA upstream 33198 23168581 ~ 23180173 (+) True AMCG00021624
AMCG00021623 mRNA upstream 46859 23156879 ~ 23166512 (+) True AMCG00021623
AMCG00021618 mRNA upstream 120503 23089532 ~ 23092868 (+) True AMCG00021618
AMCG00021611 mRNA upstream 124466 23083300 ~ 23088905 (+) True AMCG00021611
AMCG00021628 mRNA downstream 90684 23343890 ~ 23369320 (+) True AMCG00021628
AMCG00021633 mRNA downstream 216826 23470032 ~ 23480552 (+) True AMCG00021633
AMCG00021632 mRNA downstream 229749 23482955 ~ 23488208 (+) True AMCG00021632
AMCG00021631 mRNA downstream 253493 23506699 ~ 23513738 (+) True AMCG00021631
AMCG00021638 mRNA downstream 526564 23779770 ~ 23782827 (+) True AMCG00021638
TU108421 other upstream 1977291 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 1981883 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 1981883 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 2048339 21158624 ~ 21165032 (+) False AMCG00021551
TU108358 other upstream 2104003 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 921303 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 2023570 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 2898862 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 5525109 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 5807681 29060887 ~ 29065339 (+) True G88276

Expression Profile