RNA id: AMCG00021627


Basic Information

Item Value
RNA id AMCG00021627
length 2006
RNA type mRNA
GC content 0.57
exon number 11
gene id AMCG00021627
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23254939 ~ 23262180 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGGGCCATTGGCGTGCTTTTAAAAACGACGGGAGGAGAGGCCACTTTATTGGCGCTATAACTTCCACAGACAGAGGTAGCGAAACAAAGAGCGTGTACTGTCCTTCTGACGCGGGGTGACGTCACGGGCCGGCGTGTTTGATCTGAGAACCTGGTCGGTAATTAAGCTGAGAGTGAGAGGCGTCGTCATCCATAATTGAACCACCGCAACTAAAGCCAACACCTGCTTCATCACAGAAGTGCCCACCATCACGGCATCGCGGCTAATTCATTACCTTAAGTACAATATACTGTAAGGTTCTTTATCTACCCAAAGATGTTCGGCAAAGCCACCAGCAACTTTGTGAAACAGATCGACCCGGACGGGTGCCTGATTCCCATGTCCCGCCTGAATGACTCGTACGGGATGCAGCCCCTGGCCCTGGTGGTGAAGCGCACAAGGTTCTGGTTCTGGCAGAAGCCGAAGTACATCTCGTCAGACTTCACCCTGAGTGACGTGCTTTCTGGAGACGAGCCTATTAAACCCGAGGTCGTGGAGTCCGATTTCCTGAAATACGAAGGCACGTTTGGAGACAATCTGTCAGGGAAACTGGGGACTGAACTTGGGCAGTTGAATCTCAACGTTGAGGGGAAAGGGTCTTCCAAGCTGCAGTCCTCCTTCGGGAACTTAAAGAAGCGGGAAGTGGACCTCCAACAGCTGCTGCTCACCTCAAAGGGCAGGCGAACCCGAGAGAAGAAGAACGAGGTGTTCGCTTTGGTGAAAGAGAGCATCTTCACGACTCAGCAGTGCTCCATCATTGAACAGGTCCAGGAGCAGGAGCAATGCGCTGGGATTCTGGGCTTCAAATCCAGCAACATTACGATTTCGGTAAACGAGAACGGCAACTACCAATTAGACAGCAACGTTGTCCTTGAGATCCCACCACAGACTGTCCTAGCTTACAGCGTCATTGAGCTGAATGTGAAACCCAGTGGAGAGTACGGGTTGTGCCTGCTGCCGGACACTCATGGGGGCTTTGAGGCAGAGAGCAGCGGGGGGCCGCCGACGGGGCTGCTGCTTTCCCAGGTGGACGGTCCCAGGAGAGACGCCCCGGCGCGGCGGACGGTCCCCAGCAAAGCGCCACTCACCGTGCTGAGAGAAGATCTGGAAGGATTTCAGCCCATTTTCCAGCCATTTGCGGAGCTGCCAGAGGCGAAGCAGTCCGAGTTGTTCGAGGTCCTGAGCAAAGTCGTGTCCGATAGATTGCTGATCAGCGGAGTGGTGGATGTGCTGGATCAGCTGTGCAGCGGTGATGGCCAGGCGCCGGCCAATCTGGACAACCTGTGCCCCTCTCAGAAGCGCAGCGCCACTGCCCTGCTGGAGGCCATGGGGTCCGGCCCGGAGGAGACGGACGGGACCCGGGGATCCTCTGCGCTCCTCGCAGCCACACACCTGCTGGTCTGTGCCCTGGAGGGAATGTCCGATGCTGCTCTCGTCGTCCTGAGCGGCTGCTTTCATCCTCAAATGCTCCAAGCCCTGCAGCATCTGATCCGTAGCTTCACCGTTGCCAGGACGTGTCCGCTGAGCAGCGCAGCCGCAGCACCACTGAGACACAAGGAATTCCTCCAGACTGTCCAGCGGCTATTCTCCTCATCCAGCGTTGTGGTCCAGGAGGAGCAAGCGGAGCTGAGAGCCACGACGGGGCAGCAGCCTGGGTTCCTGCCCCTGCTCCTGTGCATCAGCGTGAACGGGCTGGCGGCCCTCCGCACGGGCCCCTAGGCACAGGGCCTGGACCCTGGTCCCAGAGCGAAGTGGGGCACGGGGATCGTGAGCGAGTTCAGCACGTCCTGCTCTTGAGAGGCTCGGTAGTTGGAGCGGCATCTTTTCTGAAGCACAAAGACAGACTTCTTTCTAAAGCTAGTTAGGGTTCCAGGAGAACGCTCTGCTGGGCCTTTATATTGATGCTACAACActtttatacactcacctaaaggattattaggaacacctgttcaatttctcatt

Function

GO: NA

KEGG:

id description
K22146 DFNA5; non-syndromic hearing impairment protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108898 lncRNA downstream 57096 23197581 ~ 23197843 (-) True G87234
TU108868 lncRNA downstream 148751 23093588 ~ 23106188 (-) True G87218
TU108838 lncRNA downstream 163828 23089602 ~ 23091111 (-) True G87203
TU108827 lncRNA downstream 178924 23075634 ~ 23076015 (-) True G87193
TU108813 lncRNA downstream 240157 23007394 ~ 23014782 (-) True G87181
TU108931 lncRNA upstream 67145 23329325 ~ 23330344 (-) False AMCG00021630
TU108938 lncRNA upstream 109010 23371190 ~ 23372192 (-) True G87269
TU108952 lncRNA upstream 171036 23433216 ~ 23481900 (-) True G87282
TU108957 lncRNA upstream 220792 23482972 ~ 23488212 (-) True G87287
TU108960 lncRNA upstream 220792 23482972 ~ 23488212 (-) False G87287
AMCG00021619 mRNA downstream 93948 23156889 ~ 23160991 (-) True AMCG00021619
AMCG00021621 mRNA downstream 102618 23145357 ~ 23152321 (-) True AMCG00021621
AMCG00021622 mRNA downstream 127462 23127220 ~ 23127477 (-) True AMCG00021622
AMCG00021620 mRNA downstream 145188 23096480 ~ 23109751 (-) True AMCG00021620
AMCG00021614 mRNA downstream 187200 23061533 ~ 23067739 (-) True AMCG00021614
AMCG00021629 mRNA upstream 3570 23265750 ~ 23303746 (-) True AMCG00021629
AMCG00021630 mRNA upstream 67447 23329627 ~ 23332968 (-) True AMCG00021630
AMCG00021634 mRNA upstream 232845 23495025 ~ 23498563 (-) True AMCG00021634
AMCG00021637 mRNA upstream 404413 23666593 ~ 23667210 (-) True AMCG00021637
AMCG00021635 mRNA upstream 409245 23671425 ~ 23673576 (-) True AMCG00021635
TU108883 other downstream 93962 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 2171369 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 2530059 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 2857156 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 2894684 20358301 ~ 20360255 (-) True G86640
TU108932 other upstream 76071 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 2141470 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 2643264 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 2829074 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 2889925 26152105 ~ 26154375 (-) True G87871

Expression Profile