RNA id: AMCG00021631


Basic Information

Item Value
RNA id AMCG00021631
length 2678
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00021631
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23506699 ~ 23513738 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAATTTCTATTTCGCCTGTTTCTTTAATCTCAGCTATATCTGCCCACTCTGTATGTGGAAACTGAGCCGTGAGAGATGTGGCATGGTATACAATGCCATACCATGTGCACCCTGAAAGAAATGACaacaaactgtacattttacagaacaacTTTATTTGAAGGTGAAATCAATGTGTTTGGCGGTGGGGGGAAGAATTATGCTTCTAAAATAATCCCTTGTTATTTGTAGTGGGTTAGATTGTTCCAACAACACACAGTAATGCTTTTTAGTCAGTTTGATCATTCACATGCTGAATTATTGATGCATCTTCTCCCACCTGAAGAGTCATCTTCTCAACATACCTTTAGTATAGTGCTGTGTACTTGTTATGTGTgacatcattattttgcattcctCATGTTGTGTAATTACTCAAAATGAATTGCTAATCTTTCATTCTCTTTTGATTTACAGATCTATTTAGATAATGGGGGACATGCTTGATAACCATGTGAAAAAGGTATGTATTTGTGAAGCTGTTGGTAGGCTTTACATCTGTACCTCTGTCTTCAGTTAGACTCCTCTGAGCTCGGCGCTGGTCATGGTGGtgccCTCTGCTACGAACTCTGAATCTCTACAAGGAGTTTCTTCAGTCTCTACTCCACAGAAGACCCTTTACAAGCTGaatatctgtcttttcttgCCGTTTCTACAGGAGTTTGTCAATGTTTGGGTGAGGGACCCGAGAATCCAGAAAGAAGACTTCTGGCATTCCTATATAGATTATGAGATCGGTTTACATACCAACAGTATGTGCTTCAGGAAGAAGACCTCGTGTGTCAGGAGGCGCTACAGTGAATTTGTGTGGCTGCGGCAACGACTTCAAAACAATGCCTTGTTAATAGACTTGCCTGAACTTCCCTCCAGAAACCCGTTCTTTAGTTTGAATAACACCCAGCAAATCGAACAGAGGATGGAGGGTCTGCGGATATTCCTTGAAAAtatttcacagaaCACCCTGCTCCTGTCCGACAGCCGGCTGCACCTCTTCCTCCAGTCCCAGCTGAGCATCGCCAGCATCGAGGCCTGCGCTTCGGGGCAGACCAAGTACACGGTGGCTGAGGCGATCCAGCGCTTCAGTGGCACGAACCGCAGATTCCCCCTGGAAGAAGAGGAATACGAGGACAAGTGTAAAGCCTACTCCGACTCGGACTGCGAGAGTTCATCCTCGGGGCTGGGGCACAGCAGCGATGACAGCGCGCCACGagactgcaaaacaaaagcaagtcaGGGGGAACTCTTCAGCTCGCTGCCCGCCTCTCCTTCTGAAGAGCAGCAAGTGCAACCGTAAAATAACAGTATTCACCAGAGCGCGGAGGACAGAGCTGAGCTGCTAATCTCTGCATTCATTCCAGTCCAACAAAAGTGCCTTGTATACCAGGGACCTGGCCAGAAAGAGACGGCCctttgaattgtgtgtgtttattttggagaGTATGTTGATATTAGGGGGAAAAGGTGACCTAATACCAATTCATACGGCTACAATGTCTCTGGCTCATGTTTAATGTGTGAAGTGATTGTTTTGATTGCATAGTATTTGACATTAcaaaactctcacacacacgacACTGTATTCACTTTAGTAACATCTTGATGATAACACTATCTCTCCAGGAGAGTTCAATTATACTTCAACAATGCGttactgtataaataaagttttagctgctttttgttttgttttggttgtttaaatggaaattgtgtCGGTCTACTgcaatttcaatatttatttatttttacagctgtgAGGTTGTAATATAACGCAAAATTATAGTGTTGATGATCTGAGATTAGGTAGATagctaatacattttcaaattaaatgaaattagtTCTAAAATAAAGTTTAGGTCAGTTGAAAGAGACTCCAAAACCCAATTTATTGTAATCCTTTAAGCAAAAGTGCATACCTCTACCAATTCCCCAAATACTGCcagtataaatgtatttaatagacTGAAGATGTCTCACTGTAAGGACATTTTGTAATTCTTAATATTAAAACtactacagaaaaaacaaaatactcgAGGTTCCAGCCTACAACCGTTTGGAAAATATGATGTTGCACAATTGAATCCAAACTGTAGTGCATTAGGATCAAACGCACAGCTTCCTGTGTCGGGCGTGTGCAGTTTGACTCATTGCActggaaatgaaatgtaaatcacTGGAAAACGCAGCTGCTTCATAAAGTTAAAAAGTGACCACGGCGCAGATTCATGTGGGAGATGCAACTTGATTATAATCCTAGCAAATACTGAATTGTTGCATTATGTTTTACCTCCCCAGAGAAGCCAGTACTTTTGTGTCTGTCGCATTAGAAAAGTAACGCACATTGaaactattatttgttttttaatattttgttttgggttttaaatATCAGTAAAGTGGCATGTGATGTCTTTTTCcccatgtatgtgtgtttatacatgaatgtatttgtatgtttcaaTTCAAACCACACTGCACGGCCCACTGTGTTGTCTGCTCGACCTGCATCGCAGTCACAATGCAGCCTTCATGGGGGATAAAGGTAACTTTCAGTTAAAAGTGCACACTTCGCGTAATTACTCTGTCGAGTGGCTAAAACTGCCAACTTCaataaaattgtttttctaaata

Function

GO:

id name namespace
GO:0071539 protein localization to centrosome biological_process
GO:0061512 protein localization to cilium biological_process
GO:0015031 protein transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0070986 left/right axis specification biological_process
GO:0005813 centrosome cellular_component
GO:0010008 endosome membrane cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17924 SNX10_11; sorting nexin-10/11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108962 lncRNA upstream 14607 23489307 ~ 23492092 (+) True G87288
TU108897 lncRNA upstream 308830 23197621 ~ 23197869 (+) True G87233
TU108854 lncRNA upstream 314946 23145004 ~ 23191753 (+) False G87215
TU108853 lncRNA upstream 354351 23149014 ~ 23152348 (+) True G87215
TU108852 lncRNA upstream 360189 23145004 ~ 23146510 (+) False G87215
TU108992 lncRNA downstream 160154 23673892 ~ 23678603 (+) True G87313
TU109000 lncRNA downstream 173587 23687325 ~ 23692148 (+) True G87321
TU109088 lncRNA downstream 516106 24029844 ~ 24032117 (+) True G87402
TU109111 lncRNA downstream 566998 24080736 ~ 24139508 (+) False G87423
TU109112 lncRNA downstream 566998 24080736 ~ 24101214 (+) True G87423
AMCG00021632 mRNA upstream 18491 23482955 ~ 23488208 (+) True AMCG00021632
AMCG00021633 mRNA upstream 26147 23470032 ~ 23480552 (+) True AMCG00021633
AMCG00021628 mRNA upstream 137379 23343890 ~ 23369320 (+) True AMCG00021628
AMCG00021625 mRNA upstream 253493 23213371 ~ 23253206 (+) True AMCG00021625
AMCG00021626 mRNA upstream 303284 23186272 ~ 23203415 (+) True AMCG00021626
AMCG00021638 mRNA downstream 266032 23779770 ~ 23782827 (+) True AMCG00021638
AMCG00021645 mRNA downstream 340181 23853919 ~ 23883152 (+) True AMCG00021645
AMCG00021648 mRNA downstream 442191 23955929 ~ 23974179 (+) True AMCG00021648
AMCG00021651 mRNA downstream 507127 24020865 ~ 24029573 (+) True AMCG00021651
AMCG00021655 mRNA downstream 615261 24128999 ~ 24135047 (+) True AMCG00021655
TU108421 other upstream 2270619 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 2275211 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 2275211 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 2341667 21158624 ~ 21165032 (+) False AMCG00021551
TU108358 other upstream 2397331 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 660771 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 1763038 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 2638330 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 5264577 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 5547149 29060887 ~ 29065339 (+) True G88276

Expression Profile