RNA id: AMCG00021632


Basic Information

Item Value
RNA id AMCG00021632
length 2334
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00021632
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23482955 ~ 23488208 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCAGGACTCCGAGGCAGGCACGTTCATTTGCAGTTACGCACGCAAATTGCGCGTCCGGTTTGGagaattacatttatatcaaaCGTACACTAgaaagagaaatacataaatacattcgtgtaatatttatattttacacatcGGGGGACTACACCCGTAAGGGAGAACACGGGTTGACTTTGGCCTATCGAGTTTATTTAGGCCGTGAAGAGTAGGTTAAAAGCGCTGCGCGGGGGTAGCGGTGGACTGGTAGCGCTATAAGAGGTCGGGGGTTTTGGCGCCAGTAGATACAGCAAAGACGGGAAGAGAGCATTGTTGTTGTCGTCCTCGCACTGTTTAGGAGATTCAAAGattacGTGACCTGCAGAGGATTGCGTGCAAAATCAAAGATGCCAGGAAAACCCAACAGCAATCCGAGCCAAATAGCGGGCACAATGGGAAAGAAGCAAAATGGAAAAGGCAAGAAGGCAGAGGAGGTTGAACCTGAAGAATTTGTTGTGGAGAAAGTGATTGATCGTCGGGTTGTGAATGGCAAAGTTGAATATTATCTGAAGTGGAAGGGCTTTACTGATGCCGACAACACCTGGGAGCCGGAGGAGAACCTTGACTGCCCAGAATTAATCGACGCATTCCTGGCCTCACAGAAAACCACAAGTGACAAACCGCGGGGTTTTGCTCGTAACCTTGATCCAGAGCGAATCATCGGAGCGACGGACAGCAGTGGGGAACTCATGTTCTTAATGAAGTGGAAAGAATCGGATGAAGCGGACTTAGTACCAGCCAAAGAAGCCAACGTGAAATGTCCTCAGGTCGTAATTGCTTTCTACGAAGAGAGACTGACTTGGCATTCGTGTCCAGAGGACGAACAGCAGTAACGCCCACTTCAGTggcaacttttattttgtttttgttttttcctccttaTTTTGCAGGGAATACCAGTTGCATCCTAGTGCAGAGCAGTGCTGTCTGATGGttgcatttgtatatattttagaatgttAGTGTACATGTAgggcacatttgtttttagatgCTTAGCTGTGAGCCAGTGGGTAGTTTCCGGAGTCGTCTGCTCTCGCATGtcctgaatttttttttttctgttttctgaattTGGTAGAGGAGTGGGACGGGAGGTTGGGGGGGAGAAATGAATCTCTTGCTGTTTAAAAGCCACTTTAATTGAAGatggaataaatacatgtgatgAGGTCTCATTGCTACcagtttgtattttgcatttaaatccaAGATGTCCTGttatcacattttaataaattgatcAATAAAACCTAGAACTTTTTTTAGAAACGTTTTCTACGAAGTTGTGCGTTTAGTTGAGCTTTTAAAgtgtgcagtggtctcttgctcCTATCCCCCTCTCCACAGCAGTTGGAAATTTACGATGCCCCCTTCAGATTATCCTATTCATCCTCTCTCCCCCACATACACGCACTCCACCTGACTCTTCTGCTGTTAAACTTTCAACAAGTGTCTGGACCATAGAGGGCCAACCTGCATCTTGCCTGACCCTACTAATGAGTTTCTGCAGATATGGATGGGGAATTCTGGTCCTGGAGGCCAACATTGGTGTTAGTGTGCAACCCTGTGCCTGGAGGCCTGTAATCCTGGCAGGCTGTGAGGGCATCTGTGAGCCATGCCCTCAAGACCTGGCAGGATTACAGGCCTGCAGGCAcagggtttggtttgtgttccagtggagctctcaattacttaattgaacctttattGTAACTTACCATTTTCTAAATGGGAGCCTTTTCATTGTAAACAGGGGTTTTAAGTATAAGTTGTATAAGGAGCTTTCCAAGGAACCAacttatcagttacacaatttaaatgcaaattacttaagggttcaattaagtaatggagaGCTCAGTTGGGATACAAATCTGTAGgttagggggtcctccaggactaggGTGGAGAATACCCctgctctgttttgtattttattaaagtgcaTTGTGCTCATTTTACCAGTGTAATTTTCCattgatgtacagtattttcCTTTCAAGTGATCTTTAAATTAGATTTAGTGGAGTTTCAAGAAATCCCAGATGTAAATAATGCAGGGATGTTCACTCTAGCCCCTTTGCTTAAAACCTTTCCCTTTACTGAAAACgatctttttcttttgtccGTTATGCTTGTTTTGTGAGGTTTAAATATCCTGTTGAGAGGCACAGATTCCTAAAAGTGCCAGGTTTGATCTTTTGatctttttgattgttttgtttaacagtaTAGAATGTGTGGTTTTAACTCCTGTAAATACTTTTTCAATAAAGGTTTGTAGCTT

Function

GO: NA

KEGG:

id description
K11586 CBX3, HP1G; chromobox protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108897 lncRNA upstream 285086 23197621 ~ 23197869 (+) True G87233
TU108854 lncRNA upstream 291202 23145004 ~ 23191753 (+) False G87215
TU108853 lncRNA upstream 330607 23149014 ~ 23152348 (+) True G87215
TU108852 lncRNA upstream 336445 23145004 ~ 23146510 (+) False G87215
TU108800 lncRNA upstream 468124 23007394 ~ 23014831 (+) True G87168
TU108961 lncRNA downstream 873 23489081 ~ 23584336 (+) False G87288
TU108962 lncRNA downstream 1099 23489307 ~ 23492092 (+) True G87288
TU108992 lncRNA downstream 185684 23673892 ~ 23678603 (+) True G87313
TU109000 lncRNA downstream 199117 23687325 ~ 23692148 (+) True G87321
TU109088 lncRNA downstream 541636 24029844 ~ 24032117 (+) True G87402
AMCG00021633 mRNA upstream 2403 23470032 ~ 23480552 (+) True AMCG00021633
AMCG00021628 mRNA upstream 113635 23343890 ~ 23369320 (+) True AMCG00021628
AMCG00021625 mRNA upstream 229749 23213371 ~ 23253206 (+) True AMCG00021625
AMCG00021626 mRNA upstream 279540 23186272 ~ 23203415 (+) True AMCG00021626
AMCG00021624 mRNA upstream 302782 23168581 ~ 23180173 (+) True AMCG00021624
AMCG00021631 mRNA downstream 18491 23506699 ~ 23513738 (+) True AMCG00021631
AMCG00021638 mRNA downstream 291562 23779770 ~ 23782827 (+) True AMCG00021638
AMCG00021645 mRNA downstream 365711 23853919 ~ 23883152 (+) True AMCG00021645
AMCG00021648 mRNA downstream 467721 23955929 ~ 23974179 (+) True AMCG00021648
AMCG00021651 mRNA downstream 532657 24020865 ~ 24029573 (+) True AMCG00021651
TU108421 other upstream 2246875 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 2251467 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 2251467 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 2317923 21158624 ~ 21165032 (+) False AMCG00021551
TU108358 other upstream 2373587 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 686301 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 1788568 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 2663860 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 5290107 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 5572679 29060887 ~ 29065339 (+) True G88276

Expression Profile