RNA id: AMCG00021635


Basic Information

Item Value
RNA id AMCG00021635
length 1338
RNA type mRNA
GC content 0.48
exon number 2
gene id AMCG00021635
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23671425 ~ 23673576 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGGTTGTTGGGGTCCTGTGTCAAAACTTTCAAGATTAATGGATGACTTTGTTAATGACTCAGATGTAGGTGCTCGGGTGATTTGTGAGGTGTGGGGCGTTTTTCTGACAGTCAGAAACAATGCACGGAGTGAGCAGGAGCTGCAGGAAAGACAGGCTGCCTGTGACACTGGcgattcaaatatattttaatggtgtAGCGCAGTAATGAACAAACTGACCAAAAcgtgtaaataaaaacagtgcgACCCCAGAAACGAGGCGTTCCTTACAGACTTTTTTGGATCAATCACGCAGACAGTGGCTTCTTTTGATTAAACCCCAAATTGTCATTGGGCAGCAGTAATCATGTGACAACCAATTCGGTCCAATTTCAACCTTGTCTCCATGAATTCAATAGTTTAATAGTAGCGCGGTCCCCATACGGCTGTAATCAGTGAATTAGAAAAAACACTAGCCGcgatttttatgattttttttttttggtcggGGCCACAACATACAAATAAGAGCTAACTTTCTAAAGCTCGGAGGGAAAGGGAGATGAATTACGAATTTGAGCGAGAGACTGGTTTTATCAATAGTCAGCCGTCGCTTGCTGAGTGCCTGACATCTTTTCCCCCTGTCGGTGATACATTTCAAAGTTCATCAATCAAGAGCTCGACGCTTTCACACCCGACACTGATTCCTCCTCCTTTTGAGCAGACCATTCCCAGCCTAAACCCAGGCAGCCATCCTCGCCACAGCCGCCCAAAACAGAGCCCCAATGGCAGCAGCCCCTTGCCGGCCGCTTCCCTTCCCCCGGAGTACCCCTGGATGAAGGAGAAAAAAGCTTCCAAGAAAAATCACCTGCCGACTTCTTCAGCCACAGCTACAGCAACCCCGGGACCGGTCTGCTTCCCCCCGAAAGCCCTCAACAATGTCTCCGGAGCTCTCCTGGAAAGGGAGGGTTACACATTTCAACAAAATTCCCTGACTGCACAACAGGCTCACAATATGCACAATGGAGATGTCCAAAGTTTCACTGTTTCGCCTTTAAGCAGCAATGACAAAAATGTGAAACATCTCCAGAACCCGTCCCCCACTGTTCAGAACTGCTTGTCAACAATGGCCCAGAACTGCGCAGCTGGCCTGAACAATGACAGTCCCGAGGCCCTGGACGTCTCCTCTTTGCAGGATTTTAACGTTTTCTCATCAGATTCCTGCCTACATCTCTCAGATGCTGTTTCCCCCAGTTTGCCAGAATCCCTCGACAGCCCTGTGGACATTTCTACGGACAGTTTTGATTTTTTCTCGGACACTCTCACAACCATCGACCTCCAGCATCTGAACTATTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09302 HOX_2; homeobox protein HoxA/B2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108976 lncRNA downstream 172664 23495319 ~ 23498761 (-) False AMCG00021634
TU108957 lncRNA downstream 183213 23482972 ~ 23488212 (-) True G87287
TU108960 lncRNA downstream 183213 23482972 ~ 23488212 (-) False G87287
TU108952 lncRNA downstream 189525 23433216 ~ 23481900 (-) True G87282
TU108938 lncRNA downstream 299233 23371190 ~ 23372192 (-) True G87269
TU109118 lncRNA upstream 403323 24076899 ~ 24077107 (-) True G87427
TU109120 lncRNA upstream 407160 24080736 ~ 24133311 (-) True G87428
TU109159 lncRNA upstream 525960 24199536 ~ 24201701 (-) False AMCG00021662
TU109205 lncRNA upstream 605061 24278637 ~ 24279387 (-) True G87495
TU109241 lncRNA upstream 686090 24359666 ~ 24363369 (-) False AMCG00021668
AMCG00021637 mRNA downstream 4215 23666593 ~ 23667210 (-) True AMCG00021637
AMCG00021634 mRNA downstream 172862 23495025 ~ 23498563 (-) True AMCG00021634
AMCG00021630 mRNA downstream 338457 23329627 ~ 23332968 (-) True AMCG00021630
AMCG00021629 mRNA downstream 367679 23265750 ~ 23303746 (-) True AMCG00021629
AMCG00021627 mRNA downstream 409245 23254939 ~ 23262180 (-) True AMCG00021627
AMCG00021636 mRNA upstream 4255 23677831 ~ 23685846 (-) True AMCG00021636
AMCG00021639 mRNA upstream 24068 23697644 ~ 23698829 (-) True AMCG00021639
AMCG00021641 mRNA upstream 35625 23709201 ~ 23710134 (-) True AMCG00021641
AMCG00021640 mRNA upstream 37933 23711509 ~ 23720100 (-) True AMCG00021640
AMCG00021642 mRNA upstream 50885 23724461 ~ 23727144 (-) True AMCG00021642
TU108932 other downstream 332941 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 510448 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 2587855 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 2946545 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 3273642 20395612 ~ 20397783 (-) True G86649
TU109433 other upstream 1730074 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 2231868 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 2417678 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 2478529 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 3237898 26911474 ~ 26919844 (-) False AMCG00021723

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00019669 True 1914 mRNA 0.45 2 NC_007127.7 20926673 ~ 20929183 (+)
grasscarp (Ctenopharyngodon idella) CI01000016_08315282_08316952.mRNA True 1627 mRNA 0.47 2 CI01000016 8314973 ~ 8317178 (+)