RNA id: AMCG00021637


Basic Information

Item Value
RNA id AMCG00021637
length 618
RNA type mRNA
GC content 0.54
exon number 1
gene id AMCG00021637
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23666593 ~ 23667210 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCTCCTTCCTAGATTACCCTATGATCAGTGGAGAAGCCGGGTCCTGCTCTTCCAGGGCTTTTCACCCCGAGCATGGAATTACAACTTTCCAGTCGTGCGCTGTCACCACTAATAATTGCGCCAGTGATGATCGCTTCATGATCAGCAGGGGTTCACAGGGTGGCATCCCTCACCACCCTCACCAACCTGCCGCAGCCTACCAGCCTCACAACACTCTGGGCATCCCCTACGCCAGTCACCCCAGCTGCGGCACCAGTTATGGCGCGCAGAGTTTCTGTGCAAGTTACAACCATTACGCACTGAACCAAGATATGGACTCGAGTGCGGGGTATCCTCAGTGCGCCCCAACAGTTTACTCTGGGAACATCTCGTCCTCTGTGGTTCAGCATCACCAGGGGTACAGCGGAGCATCACTGGGGGCACTTCAATACCCAAATGCTGCTTACGGGCACGAACAGCCGAACCTGTCATTTGCAGGCTGCACTAACCCCTTATCTCCATTGTGTGCCACTCACCAAGAATCCTGCTGTTCTCCTTTATCCGAAGCATCCCCCCCAGCACAGACATTTGACTGGATGAAAGTCAAAAGAAATCCGCCCAAAACTGGTGAGTGA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09301 HOX_1; homeobox protein HoxA/B/D1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108976 lncRNA downstream 167832 23495319 ~ 23498761 (-) False AMCG00021634
TU108957 lncRNA downstream 178381 23482972 ~ 23488212 (-) True G87287
TU108960 lncRNA downstream 178381 23482972 ~ 23488212 (-) False G87287
TU108952 lncRNA downstream 184693 23433216 ~ 23481900 (-) True G87282
TU108938 lncRNA downstream 294401 23371190 ~ 23372192 (-) True G87269
TU109118 lncRNA upstream 409689 24076899 ~ 24077107 (-) True G87427
TU109120 lncRNA upstream 413526 24080736 ~ 24133311 (-) True G87428
TU109159 lncRNA upstream 532326 24199536 ~ 24201701 (-) False AMCG00021662
TU109205 lncRNA upstream 611427 24278637 ~ 24279387 (-) True G87495
TU109241 lncRNA upstream 692456 24359666 ~ 24363369 (-) False AMCG00021668
AMCG00021634 mRNA downstream 168030 23495025 ~ 23498563 (-) True AMCG00021634
AMCG00021630 mRNA downstream 333625 23329627 ~ 23332968 (-) True AMCG00021630
AMCG00021629 mRNA downstream 362847 23265750 ~ 23303746 (-) True AMCG00021629
AMCG00021627 mRNA downstream 404413 23254939 ~ 23262180 (-) True AMCG00021627
AMCG00021619 mRNA downstream 505602 23156889 ~ 23160991 (-) True AMCG00021619
AMCG00021635 mRNA upstream 4215 23671425 ~ 23673576 (-) True AMCG00021635
AMCG00021636 mRNA upstream 10621 23677831 ~ 23685846 (-) True AMCG00021636
AMCG00021639 mRNA upstream 30434 23697644 ~ 23698829 (-) True AMCG00021639
AMCG00021641 mRNA upstream 41991 23709201 ~ 23710134 (-) True AMCG00021641
AMCG00021640 mRNA upstream 44299 23711509 ~ 23720100 (-) True AMCG00021640
TU108932 other downstream 328109 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 505616 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 2583023 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 2941713 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 3268810 20395612 ~ 20397783 (-) True G86649
TU109433 other upstream 1736440 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 2238234 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 2424044 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 2484895 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 3244264 26911474 ~ 26919844 (-) False AMCG00021723

Expression Profile