Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00021638 |
| length | 1158 |
| RNA type | mRNA |
| GC content | 0.60 |
| exon number | 3 |
| gene id | AMCG00021638 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030130.1 |
| NCBI id | CM030130.1 |
| chromosome length | 39556810 |
| location | 23779770 ~ 23782827 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K09320 | EVX; homeobox even-skipped homolog protein |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU109000 | lncRNA | upstream | 87622 | 23687325 ~ 23692148 (+) | True | G87321 |
| TU108992 | lncRNA | upstream | 101167 | 23673892 ~ 23678603 (+) | True | G87313 |
| TU108961 | lncRNA | upstream | 195434 | 23489081 ~ 23584336 (+) | False | G87288 |
| TU108962 | lncRNA | upstream | 287678 | 23489307 ~ 23492092 (+) | True | G87288 |
| TU108897 | lncRNA | upstream | 581901 | 23197621 ~ 23197869 (+) | True | G87233 |
| TU109088 | lncRNA | downstream | 247017 | 24029844 ~ 24032117 (+) | True | G87402 |
| TU109111 | lncRNA | downstream | 297909 | 24080736 ~ 24139508 (+) | False | G87423 |
| TU109112 | lncRNA | downstream | 297909 | 24080736 ~ 24101214 (+) | True | G87423 |
| TU109140 | lncRNA | downstream | 412301 | 24195128 ~ 24198798 (+) | False | AMCG00021657 |
| TU109160 | lncRNA | downstream | 433547 | 24216374 ~ 24218824 (+) | True | G87464 |
| AMCG00021631 | mRNA | upstream | 266032 | 23506699 ~ 23513738 (+) | True | AMCG00021631 |
| AMCG00021632 | mRNA | upstream | 291562 | 23482955 ~ 23488208 (+) | True | AMCG00021632 |
| AMCG00021633 | mRNA | upstream | 299218 | 23470032 ~ 23480552 (+) | True | AMCG00021633 |
| AMCG00021628 | mRNA | upstream | 410450 | 23343890 ~ 23369320 (+) | True | AMCG00021628 |
| AMCG00021625 | mRNA | upstream | 526564 | 23213371 ~ 23253206 (+) | True | AMCG00021625 |
| AMCG00021645 | mRNA | downstream | 71092 | 23853919 ~ 23883152 (+) | True | AMCG00021645 |
| AMCG00021648 | mRNA | downstream | 173102 | 23955929 ~ 23974179 (+) | True | AMCG00021648 |
| AMCG00021651 | mRNA | downstream | 238038 | 24020865 ~ 24029573 (+) | True | AMCG00021651 |
| AMCG00021655 | mRNA | downstream | 346172 | 24128999 ~ 24135047 (+) | True | AMCG00021655 |
| AMCG00021654 | mRNA | downstream | 369237 | 24152064 ~ 24172881 (+) | True | AMCG00021654 |
| TU108421 | other | upstream | 2543690 | 21235070 ~ 21236080 (+) | True | G86861 |
| TU108414 | other | upstream | 2548282 | 21229852 ~ 21231488 (+) | True | AMCG00021561 |
| TU108415 | other | upstream | 2548282 | 21229852 ~ 21231488 (+) | False | AMCG00021561 |
| TU108371 | other | upstream | 2614738 | 21158624 ~ 21165032 (+) | False | AMCG00021551 |
| TU108358 | other | upstream | 2670402 | 21098592 ~ 21109368 (+) | False | AMCG00021550 |
| TU109135 | other | downstream | 391682 | 24174509 ~ 24177990 (+) | True | AMCG00021656 |
| TU109403 | other | downstream | 1493949 | 25276776 ~ 25365977 (+) | False | AMCG00021682 |
| TU109668 | other | downstream | 2369241 | 26152068 ~ 26197076 (+) | False | AMCG00021703 |
| TU110128 | other | downstream | 4995488 | 28778315 ~ 28778733 (+) | True | G88238 |
| TU110172 | other | downstream | 5278060 | 29060887 ~ 29065339 (+) | True | G88276 |
