RNA id: AMCG00021639


Basic Information

Item Value
RNA id AMCG00021639
length 1101
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00021639
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23697644 ~ 23698829 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatatatatatatatatatatatatacatacacattcaaatatacaaatcTATACATTCTCAGTAATCATACCATTGTGGGTATGTTTGTGTTCCCCCAAcgaatattaatattatagatATAGGGCTACCGGGCAAAATGGACAACAATCTCTTAAGGTATCAAACACAAtcgcatttttaaaacattgctttgTTATTAGGGTGTCGTTTCTgttaatatataatactttaataaatccATGATGAATTCTAGTGTcttatttacagatattttttCCAGACGGGCAGATGTTTTTCGGTGctcactgtttaaaataacccCCTCAGACGCCTCTCCTTAGTGGGAATGTTTATTAAGGATGTAAATAGAAATATTTCACATCGAATCAGCGGGacgtgtgtgcattttaatatttgtgtctTTCTGAAATTTTAAcctaattagaaaacaaaaatgttgacTGCTTGGGCAATTTCGTTGTGTGCCCAGTGCTGGTTTGCTATTGGTGTCTGTGTGCACAGTGCCCACTGGAGACCCGCCGATTGGTGGGATCTTTCACGTGATCGCCCAACTTTGCACATTGGACAGGGAGTAGGAGGGTTTTGTAGGGATCAGAAAAACGACAAGGCGAGAAAAATTAGTATTTTTGCACTTCCCAAATTAATGGCCATGAGTTCGTATTTGATCAACTCCAACTACATCGAACCTGCTTTCCCGTCTTGCGAGGAATACTCGCAGACCAGCTACATACCCACCCCCTCTCCTGAATATTATGACCGGCCGAGAGATCCTGGATTCCCACATCGAGAGGCGCTCTTCCAGCGGTCAAACTACAGGGACCAGAGCTACGACTACAACAACACTGTCCATCCTAGTGGGCAGGAGGACTTTCCCCAGCGAGGACATGATCCAGCCCAGCCCGTCCTGCAGACCCACATTGCGCGGCGGAACCAGGACTGTGAAAGTGTGGCAGTGaccacagacagcagcctgcCTGAGAAATCCCCAGCTGGCCAGAAGGCTAAAGAGCCCGTGGTTTACCCCTGGATGAAGAAAGTGCATGTTAACAGCGGAAATTTACGAGCACTAAAACTGTGA

Function

GO:

id name namespace
GO:0048731 system development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108976 lncRNA downstream 198883 23495319 ~ 23498761 (-) False AMCG00021634
TU108957 lncRNA downstream 209432 23482972 ~ 23488212 (-) True G87287
TU108960 lncRNA downstream 209432 23482972 ~ 23488212 (-) False G87287
TU108952 lncRNA downstream 215744 23433216 ~ 23481900 (-) True G87282
TU108938 lncRNA downstream 325452 23371190 ~ 23372192 (-) True G87269
TU109118 lncRNA upstream 378070 24076899 ~ 24077107 (-) True G87427
TU109120 lncRNA upstream 381907 24080736 ~ 24133311 (-) True G87428
TU109159 lncRNA upstream 500707 24199536 ~ 24201701 (-) False AMCG00021662
TU109205 lncRNA upstream 579808 24278637 ~ 24279387 (-) True G87495
TU109241 lncRNA upstream 660837 24359666 ~ 24363369 (-) False AMCG00021668
AMCG00021636 mRNA downstream 11798 23677831 ~ 23685846 (-) True AMCG00021636
AMCG00021635 mRNA downstream 24068 23671425 ~ 23673576 (-) True AMCG00021635
AMCG00021637 mRNA downstream 30434 23666593 ~ 23667210 (-) True AMCG00021637
AMCG00021634 mRNA downstream 199081 23495025 ~ 23498563 (-) True AMCG00021634
AMCG00021630 mRNA downstream 364676 23329627 ~ 23332968 (-) True AMCG00021630
AMCG00021641 mRNA upstream 10372 23709201 ~ 23710134 (-) True AMCG00021641
AMCG00021640 mRNA upstream 12680 23711509 ~ 23720100 (-) True AMCG00021640
AMCG00021642 mRNA upstream 25632 23724461 ~ 23727144 (-) True AMCG00021642
AMCG00021643 mRNA upstream 33613 23732442 ~ 23742554 (-) True AMCG00021643
AMCG00021644 mRNA upstream 58047 23756876 ~ 23758021 (-) True AMCG00021644
TU108932 other downstream 359160 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 536667 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 2614074 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 2972764 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 3299861 20395612 ~ 20397783 (-) True G86649
TU109433 other upstream 1704821 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 2206615 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 2392425 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 2453276 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 3212645 26911474 ~ 26919844 (-) False AMCG00021723

Expression Profile