RNA id: AMCG00021640


Basic Information

Item Value
RNA id AMCG00021640
length 1164
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00021640
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23711509 ~ 23720100 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTTCTTCTTATTATGTGAATAGTCTTTTTAGCAAATATGCGGCGGGGACTTCCCTGTTTCCCAATGTAGACCAGTCCTCCTGCTCTTTCGCACCCGGCGCTCAGAGAGCCGCATATGGACCGGGGACAGCCGCCTTCTCCTCGTCTCTACCCGGGCTCTACAGCGTCAATAATGCCATCTACCAGAACCACTCGGTGTTCACCTCCGGGTACAACCTGGGCTCGGACGCCTACAACCTGCCCTGCAACTCGTTTGACCAGAACATGCCCGTCCATTGCAACGACCTGGCCAAAGGCAACTGCGACAAAACGGACCCCCTGAGCATCCACTCTCAGGCTGATAGCAATCTCCGGATGTACCCCTGGATGAGAAGTTCAGAAACAAACCTTGGACGACCACTAATAGTTATAGCCAgatgtacaaacacacaacaaatcaCAATAGTACAGTTTGGGGAACAAATGAGTTCGTTTTTTGTGAACCCCGTGTTCCCCGCGTCCTTGCCCAGTGGTCAGGAGTCCTTCCTCGGACAGATGCCATTGTATACATCTGGCTATGATGCTCTAAGGCACTTTCCAGCTTCCTATGGCACGTCTGCGATACAGGACAAGACTTATCCATCACCGTGCTTTTATCAGCAATCCAATACTGTGCTTAATGCAAGGGTACCCTATGAGTCCGGGCCGTCCTGTTACCCTCCGGAGAAGGACCCAGCAAACCCCTACAGCACCGGCAGTGGCAAGCAGAAGGCATGCAACCAGTATGGACAACTTAACGTCAACCAAGAGTTTAAATCCGACTGTGCTCAAAACAAAATCTTCTTTAATGAGTCCCCGGACCGGAAGTTCCCTTCCTCCGTTTATCCATGGATGCAACGCATGAACTCTTGCAATGgGTCGTTTTATGGAACACATGGGAGGCGAGGGCgccagacttattccagatACCAAACTCTGGAGCTCGAAAAGGAGTTTCATTATAACAGATACTTGACCAGACGTCGCCGGATAGAAATTGCCAACGGCCTTTGTCTAACGGAACGACAGATTAAAATATGGTTTCAAAATCGGCGcatgaaatggaaaaaggagAACAAGATTTTAGGCACCACACAGGAAAATAGccaagaagaagagaaagaaaaagctgcGAAATCATAG

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09306 HOX_6; homeobox protein HoxA/B/C6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108976 lncRNA downstream 212748 23495319 ~ 23498761 (-) False AMCG00021634
TU108957 lncRNA downstream 223297 23482972 ~ 23488212 (-) True G87287
TU108960 lncRNA downstream 223297 23482972 ~ 23488212 (-) False G87287
TU108952 lncRNA downstream 229609 23433216 ~ 23481900 (-) True G87282
TU108938 lncRNA downstream 339317 23371190 ~ 23372192 (-) True G87269
TU109118 lncRNA upstream 356799 24076899 ~ 24077107 (-) True G87427
TU109120 lncRNA upstream 360636 24080736 ~ 24133311 (-) True G87428
TU109159 lncRNA upstream 479436 24199536 ~ 24201701 (-) False AMCG00021662
TU109205 lncRNA upstream 558537 24278637 ~ 24279387 (-) True G87495
TU109241 lncRNA upstream 639566 24359666 ~ 24363369 (-) False AMCG00021668
AMCG00021641 mRNA downstream 1375 23709201 ~ 23710134 (-) True AMCG00021641
AMCG00021639 mRNA downstream 12680 23697644 ~ 23698829 (-) True AMCG00021639
AMCG00021636 mRNA downstream 25663 23677831 ~ 23685846 (-) True AMCG00021636
AMCG00021635 mRNA downstream 37933 23671425 ~ 23673576 (-) True AMCG00021635
AMCG00021637 mRNA downstream 44299 23666593 ~ 23667210 (-) True AMCG00021637
AMCG00021642 mRNA upstream 4361 23724461 ~ 23727144 (-) True AMCG00021642
AMCG00021643 mRNA upstream 12342 23732442 ~ 23742554 (-) True AMCG00021643
AMCG00021644 mRNA upstream 36776 23756876 ~ 23758021 (-) True AMCG00021644
AMCG00021647 mRNA upstream 93872 23813972 ~ 23824776 (-) True AMCG00021647
AMCG00021646 mRNA upstream 124571 23844671 ~ 23848491 (-) True AMCG00021646
TU108932 other downstream 373025 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 550532 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 2627939 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 2986629 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 3313726 20395612 ~ 20397783 (-) True G86649
TU109433 other upstream 1683550 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 2185344 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 2371154 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 2432005 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 3191374 26911474 ~ 26919844 (-) False AMCG00021723

Expression Profile