RNA id: AMCG00021641


Basic Information

Item Value
RNA id AMCG00021641
length 855
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00021641
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23709201 ~ 23710134 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGCCCTCCCCGCGCTCCGCCGCGCGCACGCGCTTACCTCTGGAGGTCATCCAGCAGGATTTACGACTGGACAACAAAAGCACGTGATGCTCAGTCGTACCCCATATTTGGGTGCCTACGTAGGAGGGAATCAAGTCCATGTCCCAGTCATTTCCATAATTCATCATAAATTGTGCAGGGGTGCTATAGACGCACAAAACGACCAAGACCACAAatcaagcacacacacatattattattattttttttctttgctaaaaaaataataacaatatcaaCAAATGAGCTCTTATTTTGTCAACTCATTCTGCGGTCGCTATCCTAATAGCCCGGACTACCCGTTGCATAATTATGGAGATCACAGCTCGGTGAACGAGCAATACAGGGATTCTGCGACCATGCATGCCAGCAGGTACGGCTACGGCTACAATGGGATGGATCTTAGTGTCGGGCGCTCGACCTCGAACCACTTTGGTGCTGGTGAAAGAGCTGCCAGCTACACATCTGGTGCAACAGCAGCCGCTGCAGAGCCCAGGTACAACCCACCTGCAACCGCGGCTCACTCGCCTCCACCTGACCCTCTACCTTGCTCCTCTGTTGCCAGTTCGCCTGTCCGCGAAACTCACCGCGCTGGTAAAAACTCCTTAGCCAGTCCCACTACCTCTTCATCCAGTTCAAACAACAGCAGCTCGCTCTTGAGCAGGGACGCTGTGGGGAAGGCGCCTGCCGCTGAGGATGACCACCCGGCCAGCAGCGCCCAGACAAGTTCACAAAACGGCCAAAACGCCACCGAAACCGCACAGCCCCAGATATACCCCTGGATGCGAAAGCTGCACATAAGTCACGCATGCTAG

Function

GO: NA

KEGG:

id description
K09305 HOX_5; homeobox protein HoxA/B/C5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108976 lncRNA downstream 210440 23495319 ~ 23498761 (-) False AMCG00021634
TU108957 lncRNA downstream 220989 23482972 ~ 23488212 (-) True G87287
TU108960 lncRNA downstream 220989 23482972 ~ 23488212 (-) False G87287
TU108952 lncRNA downstream 227301 23433216 ~ 23481900 (-) True G87282
TU108938 lncRNA downstream 337009 23371190 ~ 23372192 (-) True G87269
TU109118 lncRNA upstream 366765 24076899 ~ 24077107 (-) True G87427
TU109120 lncRNA upstream 370602 24080736 ~ 24133311 (-) True G87428
TU109159 lncRNA upstream 489402 24199536 ~ 24201701 (-) False AMCG00021662
TU109205 lncRNA upstream 568503 24278637 ~ 24279387 (-) True G87495
TU109241 lncRNA upstream 649532 24359666 ~ 24363369 (-) False AMCG00021668
AMCG00021639 mRNA downstream 10372 23697644 ~ 23698829 (-) True AMCG00021639
AMCG00021636 mRNA downstream 23355 23677831 ~ 23685846 (-) True AMCG00021636
AMCG00021635 mRNA downstream 35625 23671425 ~ 23673576 (-) True AMCG00021635
AMCG00021637 mRNA downstream 41991 23666593 ~ 23667210 (-) True AMCG00021637
AMCG00021634 mRNA downstream 210638 23495025 ~ 23498563 (-) True AMCG00021634
AMCG00021640 mRNA upstream 1375 23711509 ~ 23720100 (-) True AMCG00021640
AMCG00021642 mRNA upstream 14327 23724461 ~ 23727144 (-) True AMCG00021642
AMCG00021643 mRNA upstream 22308 23732442 ~ 23742554 (-) True AMCG00021643
AMCG00021644 mRNA upstream 46742 23756876 ~ 23758021 (-) True AMCG00021644
AMCG00021647 mRNA upstream 103838 23813972 ~ 23824776 (-) True AMCG00021647
TU108932 other downstream 370717 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 548224 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 2625631 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 2984321 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 3311418 20395612 ~ 20397783 (-) True G86649
TU109433 other upstream 1693516 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 2195310 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 2381120 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 2441971 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 3201340 26911474 ~ 26919844 (-) False AMCG00021723

Expression Profile