RNA id: AMCG00021643


Basic Information

Item Value
RNA id AMCG00021643
length 1602
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00021643
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23732442 ~ 23742554 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATTTTGATGAGCGGGTTTCTGTGGGCTCTAACATGTACTTACCCAGTTGTACGTACTACGTCTCCGGTGCTGATTTCTCCAGCCTCCCTTCCTTTTTACCCCAGACCCCGTCTTCTCGCCCCATGACGTACTCCTATTCATCTAACCTGCCCCAGGTCCAGCCTGTGAGAGAAGTCACCTTCAGGGACTATGCCATTGATGCATCCAGTAAGTGGCATCACAGAAGCAATCTCTCCCATTGCTATTCGGCAGAGGAGATCATGCACAGGGACTGCCTGCCTGCCCCTACCACCATGGGGGAAATGTTCGCGAAAAACAACTCCACTGTCTACCACTCGAGCTCCAACTCCACGTCCAATTTCTACAGCAGCGTGGGGAGGAACGGTGTGCTGCCCCAAGCCTTTGACCAATTTTTCGAGACGGCGTACGGGAACACAGAAAATCCGCCGTCCGACTACTCTGGGGACAAAAATGCCAACAAACTGCCTCCTGCCGCCGCCGTGCCGGGGTCTGATCCATGCAGGGAGACAGAGGCGAAGGAGCGCAGGGAAGAGAGCAGCAGCCCCGGGTCCTCTTCCGGCAACAATGAGGAGAAATCCAGCAGCACCAgtggCCAGCGTACTCGTAAAAAGAGATGCCCCTACACAAAATACCAGATCCGAGAATTGGAGAGAGAGTTTTTTTTCAGTGTCTATATTAACAAAGAGAAGCGCCTTCAGCTGTCAAGGATGCTCAACCTCACTGACCGGCAGGTTAAAATCTGGTTTCAAAAtagaagaatgaaagaaaagaaattgaACAGAGATCGAAAGGGCTATCTTCTCCCCTCGCCAAATTATACCACAACAATGTCATGCTCAGACAGCCCGGCTGGAAACTCATTTCTAGTAGACTCCTTGATCAGTGCCAGCCGAGCCGAAAGCGGTGGCGCCTACTATCAGGGCAGTGGCGTTTACTTGCCACCAGCTTCTGAGCTGCCTTACGGACTACCCAATTGTGGATTTTTTCCAGGATTAAGTAAACGGAGCGAGGCGAACTCCCAGAATATGGTTCCCACCTCCAGCCCGTACATGCCCGGGATGGAGGTATGGCTGGATCCACCGAGATCATGCCGCATGGACCCACCTGCGAATCAGCAGGTAGCGCCCTGTTCCTTCTCGCCGAGCATTAAGGAGGAGAGCGCCTATTGCCTTTACGAGTCGGAGAAGTGTCCAAAAGGGTCAACGGCAGAAGACCTGTCCTATTCAAGGCTAACATCTGGCTCCTGCGCCGTCAGTGAGGGCGGCACGGTTCCTGTACCTGGTTACTTCCGCCTCTCTCAGACTTATGCAACTTCAAAGGTGTATCACGGTGTTCAGTCGAGTTCGTCTCCGTTTGTCCTGCAACCGCCGGTCCGTTTCGAGACGCCGCCGTCGTCCGCTGCCTCTACAGAGACTGGCAGGAGAGGCAGTGAGGAGGCAGCCCCCAGCACTTTACCGTGCGTCCCccaaagagaggaggagaacagGGTCTCTTCGGCTGCAGAGGACTCCTCTCCAGACCCCACAGAGAATGGCAAAACAAGTCCCGACAAAGCGTCCAAAGAACATGATGTATAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09296 HOX_11; homeobox protein HoxC/D11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108976 lncRNA downstream 233681 23495319 ~ 23498761 (-) False AMCG00021634
TU108957 lncRNA downstream 244230 23482972 ~ 23488212 (-) True G87287
TU108960 lncRNA downstream 244230 23482972 ~ 23488212 (-) False G87287
TU108952 lncRNA downstream 250542 23433216 ~ 23481900 (-) True G87282
TU108938 lncRNA downstream 360250 23371190 ~ 23372192 (-) True G87269
TU109118 lncRNA upstream 334345 24076899 ~ 24077107 (-) True G87427
TU109120 lncRNA upstream 338182 24080736 ~ 24133311 (-) True G87428
TU109159 lncRNA upstream 456982 24199536 ~ 24201701 (-) False AMCG00021662
TU109205 lncRNA upstream 536083 24278637 ~ 24279387 (-) True G87495
TU109241 lncRNA upstream 617112 24359666 ~ 24363369 (-) False AMCG00021668
AMCG00021642 mRNA downstream 5298 23724461 ~ 23727144 (-) True AMCG00021642
AMCG00021640 mRNA downstream 12342 23711509 ~ 23720100 (-) True AMCG00021640
AMCG00021641 mRNA downstream 22308 23709201 ~ 23710134 (-) True AMCG00021641
AMCG00021639 mRNA downstream 33613 23697644 ~ 23698829 (-) True AMCG00021639
AMCG00021636 mRNA downstream 46596 23677831 ~ 23685846 (-) True AMCG00021636
AMCG00021644 mRNA upstream 14322 23756876 ~ 23758021 (-) True AMCG00021644
AMCG00021647 mRNA upstream 71418 23813972 ~ 23824776 (-) True AMCG00021647
AMCG00021646 mRNA upstream 102117 23844671 ~ 23848491 (-) True AMCG00021646
AMCG00021649 mRNA upstream 142738 23885292 ~ 23892646 (-) True AMCG00021649
AMCG00021650 mRNA upstream 191930 23934484 ~ 23942615 (-) True AMCG00021650
TU108932 other downstream 393958 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 571465 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 2648872 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 3007562 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 3334659 20395612 ~ 20397783 (-) True G86649
TU109433 other upstream 1661096 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 2162890 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 2348700 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 2409551 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 3168920 26911474 ~ 26919844 (-) False AMCG00021723

Expression Profile