RNA id: AMCG00021651



Basic Information


Item Value
RNA id AMCG00021651
length 870
RNA type mRNA
GC content 0.60
exon number 5
gene id AMCG00021651
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24020865 ~ 24029573 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTGCAAGAAAACATCAATCTCAACGGCAGGAGGCTGAAGGCAACGCTGTCGCACCACCCGGCGGCCATGCCCAACGGGAACATGAACACCATGGGCCACATGATGGAGATGATGTCAGCGCGGCAGGACCAGGGGCCCCACCACCacctgcacccccacccccacgccCACCAGCCCATGCAGCCTCCGCCTCACGCCTACCAGCACCAGCATGCCCAGCACCACCACCACGGGCACCCACCACCGCCCCACCACCACCCACAGAGccaccagcaccaccacccccaccagcCGCACATGCACAGCCACCCGGGCCACCACCAGACATCCCCCCACCAGGGCATGCACCCCGGGGCCCAGTCTCAGGTGTCGCCCGCGGCCCAGCAGATGCAGCCGACCCAGACACTACAGCAGCCCCAGCCCACCGGAGGCCGGAGGAGGAGAGTGGTGGACGAAGACCCGGATGAGAGGCGGCGGAAATTTCTAGAAAGGAACCGAGCCGCCGCCACGCGTTGCAGACAGAAGAGGAAAGTGTGGGTGATGTCATTGGAAAAGAAAGCAGAGGAGCTAACTCAGACAAACATGCAGCTTCAGaatgaGGTCACGATGCTGAAAAACGAAGTAACACAGCTCAAGCAACTGCTTCTCACGCATAAGGACTGTCCAATCACTGCCATGCAGAAGGAGTCACAAGGTTACCTAAGTCCGGAGAACAGTCCCCCGGGAAGTCCCACCGCAGTCTGTACCCAGCAGCAGGTCATTCAGCACAACACCATCACCACATCCACCACTGCCGGAGACGCTGTGGGCAACTCTGCGTTAAACCAGCTAGCCAACCACAGAACAGATATGAACCCTATCCTTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU109000 lncRNA upstream 328717 23687325 ~ 23692148 (+) True G87321
TU108992 lncRNA upstream 342262 23673892 ~ 23678603 (+) True G87313
TU108961 lncRNA upstream 436529 23489081 ~ 23584336 (+) False G87288
TU108962 lncRNA upstream 528773 23489307 ~ 23492092 (+) True G87288
TU108897 lncRNA upstream 822996 23197621 ~ 23197869 (+) True G87233
TU109088 lncRNA downstream 271 24029844 ~ 24032117 (+) True G87402
TU109111 lncRNA downstream 51163 24080736 ~ 24139508 (+) False G87423
TU109112 lncRNA downstream 51163 24080736 ~ 24101214 (+) True G87423
TU109140 lncRNA downstream 165555 24195128 ~ 24198798 (+) False AMCG00021657
TU109160 lncRNA downstream 186801 24216374 ~ 24218824 (+) True G87464
AMCG00021648 mRNA upstream 46686 23955929 ~ 23974179 (+) True AMCG00021648
AMCG00021645 mRNA upstream 137713 23853919 ~ 23883152 (+) True AMCG00021645
AMCG00021638 mRNA upstream 238038 23779770 ~ 23782827 (+) True AMCG00021638
AMCG00021631 mRNA upstream 507127 23506699 ~ 23513738 (+) True AMCG00021631
AMCG00021632 mRNA upstream 532657 23482955 ~ 23488208 (+) True AMCG00021632
AMCG00021655 mRNA downstream 99426 24128999 ~ 24135047 (+) True AMCG00021655
AMCG00021654 mRNA downstream 122491 24152064 ~ 24172881 (+) True AMCG00021654
AMCG00021656 mRNA downstream 144830 24174403 ~ 24178092 (+) False AMCG00021656
AMCG00021657 mRNA downstream 153635 24183208 ~ 24198827 (+) True AMCG00021657
AMCG00021658 mRNA downstream 191348 24220921 ~ 24232757 (+) True AMCG00021658
TU108421 other upstream 2784785 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 2789377 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 2789377 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 2855833 21158624 ~ 21165032 (+) False AMCG00021551
TU108358 other upstream 2911497 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 144936 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 1247203 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 2122495 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 4748742 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 5031314 29060887 ~ 29065339 (+) True G88276

Expression Profile