RNA id: AMCG00021652


Basic Information

Item Value
RNA id AMCG00021652
length 2089
RNA type mRNA
GC content 0.42
exon number 12
gene id AMCG00021652
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24056803 ~ 24073972 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGAAGGGTACCATCGTCTGCCTCGTGTTCCTTTGGGCTGCTATTGAGCCGAGCTGTTCGAGCATTTTTTCCCCAAGGAATGTCAGAGTCCGAGCAAGTCGATCAACAGGATCAGACCCTGGAAAACCCCTGTTTCTCACCCCTTATCTGGAATCAGGAAAGATTGAAGAAGCCAGGAAGCTGAGTTTAGTGGACCCTCTCCCTGGTGGCAATGTGAAGAGCTACTCTGGGTACCTCACAGTCAATAAGACCTGCAACAGCAACCTCTTCTTTTGGTTTTTTCCTGCTCAGGTAAGGCCCGAGGCGGCACCAGTGTTGTTATGGCTTCAGGGTGGTCCAGGAGGAACTTCAATGTTTGGACTCTTTGTTGAACACGGGCCTTATGTTGTATTTCAGAATTCAACAGTGGGCCAGAGGAAGTTTGCATGGACTGACAAGTATTCCGTCCTCTACATTGATAACCcaGTTGGTACTGGGTTCAGCTTTACTGATGATGAGAGAGGCTTTGCTCGCAACCAGGATGATGTGGGAAGAGATCTATACAGCGCTCTTACACAGTTCTTTCAGATCTACTCGGAGTATCAGCAAAATGAATTCTACGCCACCGGAGAGTCATACGCTGGGAAATATGTTCCTGCCATCGGCTACTACATCCACATGAATAATCCTTCGGCGAAAGTCAAAATCAACTTTAAGGGAGTTGCAATTGGAGATGGCCTTTGTGATCCCGAAGtgATGCTAGGTGGCTATGCTGAGTTTATGTACCAGACCGGCCTTGTAGACGAGATGCAGAAACAGTTTGTCCAACAGCAGACTGATCTGGGAGTGTCGTACATCCAGCAGAAGAAATGGGTGGAAGCTTTTGAAGTTTTCGATACCTTGCTTAATGGAGATCTCGTCCCCTACCCttctttctttgaaaatgtcacAGGATGTAAGAACTATTTCAACTACCTCCAATGCCAGGAGCCTGAGGATCAGGACTATTTCGGCAAGTTTCTGTCTTTGCCAGAAGTGAGGAAAGCTATTCACGTGGGCAACCTGATCTTCCACGACGGGTCTGAGGTGGAAAAGCACTTACTGGCAGATGTGATGAAGACCATCAAGCCATGGTTAGCAGTACTGATGGAAAAGTACCGGGTACTGATGTACAGCGGACAGCTTGACGTTATTGTGGCCGCTCCACTCACCGAGCGCTTCCTTCCTACGGTTCCGTGGTCCAAATCGGAGGAGTACAAAAAGGCCCAACGGTTTTACTGGAAGGTCTCTCCTGATGACACGGAAGTGGCCGGGTTTGTCCGCCAGGTCGGGGAGTTCTATCAGgttaTTGTCCGTGGGGGAGGACACATTTTACCTTATGATCAACCAGAAAGATCCTTTGATATGATCGACAGGTTCCTTTCAAGAAAAGGGTGGTAACAAGGGTGACTTTTCCCCAAGTTgcacatttcattacaattacaaagatTTTGAATGAgagtgttacatttttttgcTGGTTGTACAATTTGAATTTACTGATTTTACAAGACTTGAGTATTGGTGCACCTTATGACAATGGGATTTGCTTAATAAGATGTGTTTTGTAACTCTTATGAAAATTAATATGTTCAGgacactgcaaataaaaaatattatttttgtatttttaaaccatcCCAAAACTGTTGTGAACGGGGATTCTGCTTTTAAAGGTCAGAAATGCACAGTAACAAGACTGTAAGGTTTATGTCCCAATAAGGTATTAAGGGttaaatgaggaaaaaatatGGGTAGaccagtaaaagtaaaacaaataaactaaatctaTCAAAACCCCATGATTTGTAACACTCCAAAACGTAATTGTTtaaaagatttttgttttattttttttaataatctgaaGTTCATTAAATCACACTGCATATGAATTAATCCAAGCACGCTAACACTTTGGATGACAAAATCGGAAGATACTATACCATGATGTAAGGTGAAATAGTCTGTATTTTTCCtcagttttgtgttatttttctgaCTCCTTAACCTTGATCATTGGAACAAATGctactaataaaatattaaagacattttgaaaatgataaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004185 serine-type carboxypeptidase activity molecular_function

KEGG:

id description
K09645 CPVL; vitellogenic carboxypeptidase-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108976 lncRNA downstream 558042 23495319 ~ 23498761 (-) False AMCG00021634
TU108957 lncRNA downstream 568591 23482972 ~ 23488212 (-) True G87287
TU108960 lncRNA downstream 568591 23482972 ~ 23488212 (-) False G87287
TU108952 lncRNA downstream 574903 23433216 ~ 23481900 (-) True G87282
TU108938 lncRNA downstream 684611 23371190 ~ 23372192 (-) True G87269
TU109118 lncRNA upstream 2927 24076899 ~ 24077107 (-) True G87427
TU109120 lncRNA upstream 6764 24080736 ~ 24133311 (-) True G87428
TU109159 lncRNA upstream 125564 24199536 ~ 24201701 (-) False AMCG00021662
TU109205 lncRNA upstream 204665 24278637 ~ 24279387 (-) True G87495
TU109241 lncRNA upstream 285694 24359666 ~ 24363369 (-) False AMCG00021668
AMCG00021653 mRNA downstream 1931 24052590 ~ 24054872 (-) True AMCG00021653
AMCG00021650 mRNA downstream 114188 23934484 ~ 23942615 (-) True AMCG00021650
AMCG00021649 mRNA downstream 164157 23885292 ~ 23892646 (-) True AMCG00021649
AMCG00021646 mRNA downstream 208312 23844671 ~ 23848491 (-) True AMCG00021646
AMCG00021647 mRNA downstream 232027 23813972 ~ 23824776 (-) True AMCG00021647
AMCG00021662 mRNA upstream 125576 24199548 ~ 24210205 (-) True AMCG00021662
AMCG00021660 mRNA upstream 141896 24215868 ~ 24220678 (-) True AMCG00021660
AMCG00021661 mRNA upstream 163303 24237275 ~ 24256623 (-) True AMCG00021661
AMCG00021663 mRNA upstream 187929 24261901 ~ 24277596 (-) True AMCG00021663
AMCG00021666 mRNA upstream 205620 24279592 ~ 24307071 (-) True AMCG00021666
TU108932 other downstream 718319 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 895826 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 2973233 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 3331923 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 3659020 20395612 ~ 20397783 (-) True G86649
TU109433 other upstream 1329678 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 1831472 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 2017282 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 2078133 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 2837502 26911474 ~ 26919844 (-) False AMCG00021723

Expression Profile