RNA id: AMCG00021654


Basic Information

Item Value
RNA id AMCG00021654
length 4653
RNA type mRNA
GC content 0.37
exon number 7
gene id AMCG00021654
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24152064 ~ 24172881 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAGAGGTCTCCGCAGAATGGAGCACAGCTGCCGCGACTTTGCTGGCTGCTTTTAGAAGACGCTTGACAAACCTAAGGGCTCCCAGCCTCAGCGGCTCGGGGGAAGAAATGGAAAGGCTCTGGGACCCAAACGACATGCCCTCTGAGGAGCTGTGGTTGGACACTGAGCAGAACTGCAGCCTGGTGCCGCAGAAGTCCAAACGGGACAGGAAGCGGCAGGAGCTGCTGGCCATGGCTCTGGGGGTGAAAGTCAGCGGCCGCGGGACCATGTTGTGGCAACCTCTAAAACTCTTTGCCTATTCACAGATAACGTCGCTGGTCAGGAGGGCCGCCCTGAAGGAGAACGAGAACCATTTCAACTACGAGAAGGCTCACAACTTCAAGGTCCACACGTTCAGAGGGCCTCACTGGTGTGAATACTGTGCCAACTTCATGTGGGGACTAATTGCTCAGGGAGTCAGATGCTCAGattgTGGATTAAATGTGCATAAGCAATGTTCCAAGTACGTCCCCAACGACTGCCAGCCAGACCTCAAGAGGATAAAGAAGGTTTACTGCTGTGACCTGACCACACTGGTCAAGGCACACAACACCCAGAGACCCATGGTGGTGGACATGTGCATTCGGGAGATAGAAGACCGAGGTTTACAATCTGAAGGACTCTACAGAGTGTCTGGATTCACTGAACACATTGAAGATGTGAAAATGTCCTTTGATCGAGATGGCGATAAAGCGGACATCTGTGCTAACACGTACGCAGACATCAACATAATCGCAGGAGCACTTAAGCTTTACTTTCGAGACCTACCCATCCCCGTGATTACCTATGATGTGTATTCCAAGTTTATTGAAGCAGCAAAATTAACGAACCCCGATGCCAGACTGGAAGCGATTCACGACGGCCTGCTGTTGTTGCCCCCCGCGCATTACGAAACGCTGCGGTACCTGATGACTCATCTGAAGAAgGTAACCATGTTTGAAAAGGACAATTTTATGAATGCTGAAAACCTGGGAATAGTGTTTGGACCAACACTAATGCGGCCCCCCGATCAGAACACGCTTGCCACTTTAAATGATATGAGATATCAGAAATTAATCATTCAGCTTTTGATTGAAAatgaagatgttttgttttaaacaaatgaagGGCATCTTTCCATTTGGCATCCCCACTGAAATGGACTAAATAACCAATAGCAAACTGCAAGTAACCCAGGATTGTTATTCTGCAATTGTGCAGATGATTGCCAATGTTATTTCTCTGTCTTATAGACATATCTCTATTGAGGTAAGGGTCAGATCTGGTCTCCTGCCCTGTATCTTTAGATGGCACTGTGGTCTGAATTACACTTTATCAGATCCCTGGTTCCtggtttctttattataatattacacCACACTTTCATCACAGAACATAGAcatatttggggggggggggtaaaagTAGACTTGGCATTAACTCATAATACTGATATCAATCAAAGTAACAATACAAATGATCTTAAGGTAAGACTAGTTCTCCTTTTCCTCGACACACTTTATGCATAGGACATACAGTATATAGGATAAGCTGATCCATATATAAGACTTTATATATGGtctttgattattgtttttatatcagCATAAATCACTTTAGTTCATTTTGTTGTGTGCATGGATCTGTGTGTTGTTAATCTACTTGGTTTCATCTGTGATTCTCAATACTAAAGCATTAGATGTAAAATCATcttaagtaaaattaaatgaaagagaTAAAGAGACTTTCAAAATCCTAACATTAGGGTTAGTCCATCAGACTAATATGCGTTACTTAGTTACACACTGTTTAATATAAACTTTTAATCATGCTATTCATCATGCTAATCATAATACTTTGTTACGTGTGTCATTTGAAAAAAGTTGTCAAAACTGCCTTTaggcaaagtacattttttaaagctactgagtttgtttcctttgtaatgagtgatttcttttttaaacatctttgtTTACTTCAGCTTAACTCtgctgtaaaatgtaacaaatgagATTTATGTTTCTAACGtgggcttaaaaacaaaatatataataataattaaatgggGTGCATAGTTTCAGATATTTTGATCCAAGTGACAGGTCTTAAAGATCACACATACgcattatttgaaatgtaataacacattattaaaataaaatcttaacaACAGTTGTACTTATTCTTAAGCGAATAAGAAAGAATACAGATATGTCACAGAGCCTGTTTCAACAGTGGCTTGTGTAAAGCACTGGGTGAATGAAAAGGCATTGTGCAGTTGTGCTGCAGCTGGAAACTGATTATAGCCAATAGCTTTTACATTATTacgtttcagtttcagtttggGGGGGTTGAAAGGCTGGTATAGTGACACTTTTTAACCCAGCCAGCAGTGTTCTATACATAAGCAATCTTCCAGCAGTGTGTGTACAAGCACTAAAACATGTCTGTAGCACTTctccaacacacaacaatattgTTTCTGATTTTGAAATTCCTATACTTTTTATTCTTCAATGTTAGACACAGTGAACTGTCATGTTTTACACCATTTTAGGGTGCTTATTTGGAAGATCAATTAAAGGTTATCTGTAATTCACACCGTGATAAATATGCTTTACATACAATAGATGAATAGGGATCCATTCATTCATCAACCATATTCATTTTAGAAGCATTTTCACATTGATATGGATTGTGTTCTCCTTGGAAAGATGGGTAATAAGACTGTGAATGAGAAACAACACATCTGTCTCCATGACACCCAAACCTAAAGATACAAGGACAGCGGACAGTCCTGACCCTGTGAGAAAATTAgcactttttcttttgcttaAGAGTGTATTTAATCTGCCTGTAAAACTAAGTGTATTGTTAACGTCTTGTTcctgtatttatatacagtacgtactttgaaaaaagaaatactTTCATTCTGTAAATAGAGCCgtcttttaattgtaaatgcaattgttttggttgaattattattgtggaagaaaatggaaaaaaggatTACCCAAAAAAGAATTTTTTCTTGTGTGAGTCTCATTTTAGTTGATCTACAGTGCTTATGAGTAAGGTACTTCATagtcaaataatacaatatagctTTCACTAGGTTTGTTAACTAATCAATGTGATTTCATATTTCAGTTAAAGGATTTGATCTAAacaaaatctaaagaaaaaataaattgagctTAACTGcaataatttgatgtttaaagtaaaattattaGGAACGTCCGTTTTCTATATTTAAGTTCATTGTGAATATCTGTTATAAGTAGGTGCCTTTTGCTAACTGTACTGTATCATAAGAATATTACTGAGACCAGCAAGAACATTGCTTtgataaaacaatacatgtaaatgtctttttttccccacttgtCATTATTatcagatttgattttgtttgggtttttgttttttgtacaaatAACAAAGGTACTTCCTTTATACAAAATTAAGATGCGGAGATTATTTTTTGtgaacatattttcaatttagattgaaatttataaaaatgtaagaagatacatttattaaaggtgttttaaagcattatatGATGCATTAACTCACAACTATCACAAATGATtccgtttttttgtttctgtaactgTGTGTCTGGGAATGGAAAAGTCAGCAAAATCTACATCCAGGTGGGGAATCCATTGTCTACAAAAATTGTTATGAATAAAGCTTATCTTTTTCCACTGTGTGGATAAACATGGTAACGGGGAAGTCCAAAGTTAGAGTCTGATATATGTTTATGGTGCAAGacattgaaaatgcaaaattttAATGCTTGTGGAAAATTCTAGTATCTTCCCATTTTATGCATATCCAAGAACATCCATGTTATGACACCTGGctgaaatattattaaacacattttgatattttgtcaACTTTAACTTGTCCAAATTTCTCTTTGCACAATTGGAAGTCATGTTCATTAAAGTTGCATTGCGAACTACAATGTGTTCCAGTTCCAGTATTTCCAAATCAAACTTTGTTcgaaaaatgaattgaaaactTGCACAGAATCTGAGTTTCACTGCAAGAGGTACTGGCACAGAGCCACACTTGCAGTGTCTATTATCTACTATCTAGTATCTAGGTTGTATAGTAATGtaagttattattaatacaatgatGAAGTatgaatataatgttttaaaattgaacagACGCTGCAGAAGTTTGTGATGTTTTGTGACCTTCAGCATTCCAATTCCTGCATATTTCTGTGAAGTACCCACTTATAATGAAGTATTATTGTGTGAATGTAACACAATGTACATGAAAGGGGCTTGTGATTTTAGATTTCACAATAGAGCATTTTTGGAAACAAGACCTTGGAAGTTTTTCCTATTAGTAgctgttttttaactttaatatcATTCAGACATTGCATTTGATAAATCATTCTTTCAACTGTTGCAGTGTAATCTTATTTCTGACTTTAAAGAGGAAGGTAACCTTGCAAATATTTACCTAATGCTGTTGGCATGAATACAATTGTTAGTAGCAATCACTGTCTGTTAATTTATAACTAGCAAATATGAATAGCCGTATGAAAGGAAACCTGCTTGCATTCCCTGTTAAAAAGAGTG

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function
GO:0001565 phorbol ester receptor activity molecular_function

KEGG:

id description
K20630 CHN1_2, ARHGAP2_3; chimaerin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109111 lncRNA upstream 12556 24080736 ~ 24139508 (+) False G87423
TU109112 lncRNA upstream 50850 24080736 ~ 24101214 (+) True G87423
TU109088 lncRNA upstream 119947 24029844 ~ 24032117 (+) True G87402
TU109000 lncRNA upstream 459916 23687325 ~ 23692148 (+) True G87321
TU108992 lncRNA upstream 473461 23673892 ~ 23678603 (+) True G87313
TU109140 lncRNA downstream 22247 24195128 ~ 24198798 (+) False AMCG00021657
TU109160 lncRNA downstream 43493 24216374 ~ 24218824 (+) True G87464
TU109188 lncRNA downstream 88081 24260962 ~ 24261617 (+) True G87482
TU109237 lncRNA downstream 186623 24359504 ~ 24360909 (+) True G87525
TU109347 lncRNA downstream 761542 24934423 ~ 24935826 (+) False AMCG00021676
AMCG00021655 mRNA upstream 17017 24128999 ~ 24135047 (+) True AMCG00021655
AMCG00021651 mRNA upstream 122491 24020865 ~ 24029573 (+) True AMCG00021651
AMCG00021648 mRNA upstream 177885 23955929 ~ 23974179 (+) True AMCG00021648
AMCG00021645 mRNA upstream 268912 23853919 ~ 23883152 (+) True AMCG00021645
AMCG00021638 mRNA upstream 369237 23779770 ~ 23782827 (+) True AMCG00021638
AMCG00021656 mRNA downstream 1522 24174403 ~ 24178092 (+) False AMCG00021656
AMCG00021657 mRNA downstream 10327 24183208 ~ 24198827 (+) True AMCG00021657
AMCG00021658 mRNA downstream 48040 24220921 ~ 24232757 (+) True AMCG00021658
AMCG00021659 mRNA downstream 101214 24274095 ~ 24276540 (+) True AMCG00021659
AMCG00021665 mRNA downstream 169971 24342852 ~ 24353253 (+) True AMCG00021665
TU108421 other upstream 2915984 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 2920576 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 2920576 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 2987032 21158624 ~ 21165032 (+) False AMCG00021551
TU108358 other upstream 3042696 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 1628 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 1103895 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 1979187 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 4605434 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 4888006 29060887 ~ 29065339 (+) True G88276

Expression Profile