RNA id: TU109135


Basic Information

Item Value
RNA id TU109135
length 2747
RNA type TUCP
GC content 0.41
exon number 2
gene id AMCG00021656
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24174403 ~ 24178092 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGGGAGCCGGGTGACGTTTGCAGGAGGTGCGTTATCTGCGCACCTGACAGGTACAGGAGGAATCTGGCCCGTCcgctccagcagcagcaacccAGTCCATCAACTTGCTTTCCACCAGGACGTGTTGTTGCATGGGGCGCTGGATCTGAGCTCTGTGGGAAACGGGACCTGAAGTGCATTTAGTCTCTGAAGCATCATGTCTGTGTTTCTCAGCGCTGGACAGGTGCGCGTCTAAACCAGGTCCAGCTTGGGAAGGACAAGAGAGCCTTTCGGCGACTGGCACGCCTCTGGGGACCGTTTGATCTACTTCACATTTGACAGAAAACGAACTTAAATCCGAAACATGGATTAACAAAGGAGGAGAacaggggggggggaaataacgTGTTGTCGGTGTCCTGGGCTTGTCTTCTGTGGAGGACAGGTGTGAATATCATCAGGTATAGCAAAGCCCCGCAGTTCAGGGATGGCAGAGAGAAACGGCTGGTGGAAATCCATTACAACGAGGAAGAAGAAGGAGTCGGTGGTCCAGCATGAGGGGGGTCCCGAGCCGCCGCTGGACAAGAGCCCGGCTGCGCTCATCTCCGACTCGCAGGAGAACCAGCCGCCCAACCAGAGGACCGAGCCGGACTTTGACGAGCAGAAACTGGACCCGGCGCTCAACGACAAGACTTTCCGCAGGAATCTGAAAATCTCCCGATCCGGCCGGTTCAAGGAGAAGAGGAAAGTGCGCGCAACATTGCCGGAGAACAACAACTTCTACGAAGGCAGCAGCCCTGGAGTCACTGAAGACCTGCACTGACGCCATGACTTTCACTCGGGATGGATGTGGGACATGTTGGACGTGGGGCCCTCATGTGGGATTTCATTGTCAATGGAAGACCTAAATAGTTAATGAAAGCaatcattacatatttatttcggATCAGGTCAGATCATGCTAGGGGCGTATATTGGGCAGTGTCGTTCCACTGCGTGTTCAGATTGGATTGTTCTGACTCAGAGCTGGTGCAGATGACgtgcaatgtgtgtttttgaattGGGATGCTACATTGGGAAGATACTGGTTTTACACATGTTGTAGCCTTGGCATTTAATTCAGGTCTAATTGATTTGTTCTTAAAAGAATATCCACATTCGAATATCAAgcacttttttggggggaaggatttatcattatttttgaagGGTGAGGTTTCTTTCATTGGGCGACCTAAGCAGAATTGCACTATATGTCCAATGAAGAAATGTATACAAGGACGGAATATATTGAATGAATAATATATCCAATTCCTAGAATGAAGAGTTCAGTATAAAACAGCTGCTCAGGTGTCGTATTGTTAAGCAAGCAAGTATGTTGTTCAGAGACTGCTAAGCATTATTAAGGAATTATACTGTCATCagtcaaggttttttttttatttttatgtttgcatattattaatattaggtTGTATcatatgtgttttaatttttttaaataattactattGACATGCTGTGTAGTTGTTTTTTATACCAATGGgatttacatttgtttgggATGGGTTGAAGaccatacataataataatgttaataatcatcattttaaaactagTGACACAAAGTAACAAACACTGGTGACCTGGCAAAACATACCCCATATGCAATCGGTGTAATCCTTGGTgagatttaatacaaaaaatttaGCAGTGAAGCAGTAATTTGACCTTTAACACCATGAATTCCAGAATTGAAGTGGTCTTATaggtatatttaaatcattaatgGGTGGTACGTGGATCTGCCCAACTATAGTAGCAGGAATCCTTTAAAGTCCAAAGCTCCCAAATAAATCATGTAATGTTCATTGCTGTTGCTTCTGCACATAATGCTGACACCCTGGATTGTTCTAGAAGTAAGGGTGGCCTTTTCTATGCCCAGCAGTGCTCTTCAATTTTATATCTCAGCTAACCATTTTTGcctgcaaatgaaaatgaaggaaCTGTTACCTGCTGCAGATTGAAGGATGTTTATTAGGTATGGGTGCTGTGTTTATGACTGGGGGGTGAAAACGATTTGGATCTGTTGTTTATGTGAAGAATTGTTGTGACTTTACATATGCTGTTGttcatttagtttgttttgcagaGATTGTTTGGCAATGATATAGAATTGCGCAGttggatttaaatatttttataccaCATTAAAAGTCACACAGGGTAAATATGactcaattatattttataaattatatttttgctgCACATGATATTTTCAGATCAATTCAGAGCCAAGGGCAGCCCCATCAatcttgttttttgtatcaATTAAGGGCAATTTCAATCTTCATGCAATGTGTTTCTAATAGCTAGAGAGGTAGAAGAGTTCACATTagaaaatgagaagaaaagtCTAGAATCTGATGGATTGATTGGGGACTTTCTTACCTCAATGAATCATCAGTTATTTAAAAGTCACATGATAAGGGCTATATTATGCCTTGACATGTTTCCAGTGTGTTTGAAGATGGCGTTGAAGTATGTGAAAGTGCTGTTTTGAACATTAGGTGGTTtcataagtatattttaataagactTGGAATTAATCAGTGAAGGCATACAGTCCCTATAATATCACTGACGTTCTGCAAACCCTTGGAGCAACAATACGaccaaataatacacattatgaATGTAAAATTGAATCCTATTAAACTTAAAAAGGATGGCCATTGAAGGTTCAtcattgtcaataataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109111 lncRNA upstream 35001 24080736 ~ 24139508 (+) False G87423
TU109112 lncRNA upstream 73295 24080736 ~ 24101214 (+) True G87423
TU109088 lncRNA upstream 142392 24029844 ~ 24032117 (+) True G87402
TU109000 lncRNA upstream 482361 23687325 ~ 23692148 (+) True G87321
TU108992 lncRNA upstream 495906 23673892 ~ 23678603 (+) True G87313
TU109140 lncRNA downstream 17138 24195128 ~ 24198798 (+) False AMCG00021657
TU109160 lncRNA downstream 38384 24216374 ~ 24218824 (+) True G87464
TU109188 lncRNA downstream 82972 24260962 ~ 24261617 (+) True G87482
TU109237 lncRNA downstream 181514 24359504 ~ 24360909 (+) True G87525
TU109347 lncRNA downstream 756433 24934423 ~ 24935826 (+) False AMCG00021676
AMCG00021654 mRNA upstream 1628 24152064 ~ 24172881 (+) True AMCG00021654
AMCG00021655 mRNA upstream 39462 24128999 ~ 24135047 (+) True AMCG00021655
AMCG00021651 mRNA upstream 144936 24020865 ~ 24029573 (+) True AMCG00021651
AMCG00021648 mRNA upstream 200330 23955929 ~ 23974179 (+) True AMCG00021648
AMCG00021645 mRNA upstream 291357 23853919 ~ 23883152 (+) True AMCG00021645
AMCG00021657 mRNA downstream 5218 24183208 ~ 24198827 (+) True AMCG00021657
AMCG00021658 mRNA downstream 42931 24220921 ~ 24232757 (+) True AMCG00021658
AMCG00021659 mRNA downstream 96105 24274095 ~ 24276540 (+) True AMCG00021659
AMCG00021665 mRNA downstream 164862 24342852 ~ 24353253 (+) True AMCG00021665
AMCG00021664 mRNA downstream 193877 24371867 ~ 24377488 (+) True AMCG00021664
TU108421 other upstream 2938429 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 2943021 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 2943021 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 3009477 21158624 ~ 21165032 (+) False AMCG00021551
TU108360 other upstream 3065141 21098419 ~ 21109368 (+) True AMCG00021550
TU109403 other downstream 1098786 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 1974078 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 4600325 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 4882897 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 5200585 29378575 ~ 29382273 (+) False AMCG00021779

Expression Profile