RNA id: AMCG00021658


Basic Information

Item Value
RNA id AMCG00021658
length 2589
RNA type mRNA
GC content 0.47
exon number 14
gene id AMCG00021658
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24220921 ~ 24232757 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGAGTGCCCACGTAGTGCGCAGGCTAGTGTGGGGACGGTTACGGAAATCGCATTGGTGAATTAAAAGACATTGACCTTGCTAATATAATGCCCTGTAACGagtagagaaaataaatcatggaaggAGTACTGTATAAGTGGACGAATTATCTGAGCGGTTGGCAGCCTCGCTGGTTTGTGCTGGAAGGGGGAACTTTATCTTATTATGACTCTCAAGAAGATGCCTGGAAAGGATGTAAAGGCAGCATTAAAATCTCTGTTTGTGAAATACAAGttcaCTCCTCAGATATTACACGTATGGACCTGATCATCCCCGGGGAGCAGTATTTCTACCTGAAGTCCATTAATGCTGCAGAGAGGCAGAAATGGCTTGTTGCTCTGGGTTCTGCCAAGGCCTGTCTGACAGACAACaggacaaagaaagaaaaaggcaagTGCGTGTGTCAAACAGGAGCCTTCGCAAACTGGGTCACTGACAGAAACTCTTGTGAAAATGGAAAGTCAAAACTCCATGAAAATACAGAGGCCCTTAAAACAAAGATGTCTGAACTGCGACTGTACTGTGACCTCCTCCTGCAGCAGgtgaataaaattaaagagaGCCCTGAACACGCGGAGTCCAGCACCACGGTCGAGGAGCCAGACAATATTGACATGGGCACCCTTGTGAAGTCCACCTGTACCACCTTCCTGAAGACGCTGGAGGAGTGCATGCAGATCGCCAGCAAAACTTTCAGCTCCGAGCTGTTGCACCAGACGCCCCCTGGCTCCCCACCTGTAGCTGCCATTAAACCACACAAGGCCAGTGTCAAGCCTAAAATTAAACCCTTCAATGCATCCAGTCACAGCATCCTGGAAAAaaaaaaagaattaaataaCAACTGCCGGAGTGAGGCTACCATGGAAACGCCGATAACCGACGGACAAGAAAAAACGACTCTTGTCGAGAGTCCGGAACGCCACGCATCGCCTGTCTCCAGCGACTCGCAGAACCAGCTTGAAGGTGGCAGCCCGGCCGAGGGGGAGCACACGGACACGGAGGAGTTCGCAGACGCCCCCAGTGAGGGCCGTGCTGAGAGTCCTGGTGGGCAGGGAGCAGGAGAGGGTCAAGGGGCTGGAGGGGGTTCGGGGCCAGAGCAGGGCGACGTCTGGGAGCAGCAGGAAGATGACCTCGAACAGAAGGACATACCGGATGGGCCGGAGGAAGTTGACACATTCTTTAGTACTATGGGCCACAGaTTTAGTGATTTAAAACTGGAAGAGGACAATGGTATCCCAACAGAGCCCTTTTTGGAGTCTTGCTATGCAATAGTCCCTGTATTAGATAAGCTGGGACCCACTGTTTTTGCTCCTgttaaaatagattttgtagGTAATATTAAgaaaatcaatcaaaaatacATAACGAATCCAGAGAGGTTCAACACCCTGCAGAAGATCGTGCTCTATGAAGTGGATACCGGTGTCGCACAGGTTCGAAATTCGGCAACCGAAGCTCTTTTGTGGCTAAAAAGAGGCCTGAAATTCCTGAAAGAGTTCTTATTAGAAGTGAATCGGGGGGAGAAAGACATCCACGCTGCTCTCAataACGCTTACGGGAAAACCCTGCGACAGTACCATGGCTGGGTTGTGCGAGGAGTGTTTGCTTTGGCACTGCGGGCAGCTCCATCCTACCAGGGCTTTGCTGCAGCGCTGGTCTCCAGGGAAGGAGATGAGCAGAAGGAGGGCTTTGCCAAGGGGATGCGCCGGGACCTGGACGTCTACTTGCCGGCCATGGAGCACCAGCTGAAACTCCTGGATGCCCTGTATGAAGACTACAATCTGGAGTCGGATGAGATCGTATGATGATGGCCAACACACAGCGAGACAGACTTTCCAACATACCGGCACAGTCAGGgggtgtctctgtctgtgtgtgtacgtgtgtttttataattctgtatttattatcgCTGCGGACTGAGTTTCCAGTCGGCTCGCCTGTGAATGTTCTGTCCGCCCAACACGCGAAGCAATAGAACATGTGGCCAGATGTTCATCTCCTCCACAAGTATTACAGGACCTCAAGGAAATCCAAGTGCAGTAGTTTTATACTCTTTAAGAATGACAATGTGTGCTGTTTCCCATTAATTCTTCTTATTCtgcttattattgttgttatatgAAGTCTGATTATTGGACCAAACTATAACGTAAGCCCTCTGCATGGAAAAGTTTCAGAAAGCTCTTATGGGGTTAGATGtagttttcagatttgttttatgttttttaagttgTGCTTCCATCACTACATATTATAGTACAATGTTGGACTCGGGTGCATTTATACAATGCTTGGACAGCCATACACAAGAAAAGTGAATTGTAATGCAGACATTCTGTACTGTGAAAAACGgacattatttattacaatcGTTTACATTATGTGggaaaacttgttttgttttttcatttgaaaattgtAGATTCTGAAGGTGATCTACATATAAATAACGCAGAAGTGACATACCATAGGaaatatgtttagttttattgaCTTGGTGATGAAAAGCAATTTATATGGAGAACTACAGGTCTGCCATTCAAG

Function

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K08051 PLEKHA8, FAPP2; pleckstrin homology domain containing family A member 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109160 lncRNA upstream 2097 24216374 ~ 24218824 (+) True G87464
TU109140 lncRNA upstream 22123 24195128 ~ 24198798 (+) False AMCG00021657
TU109111 lncRNA upstream 81413 24080736 ~ 24139508 (+) False G87423
TU109112 lncRNA upstream 119707 24080736 ~ 24101214 (+) True G87423
TU109088 lncRNA upstream 188804 24029844 ~ 24032117 (+) True G87402
TU109188 lncRNA downstream 28205 24260962 ~ 24261617 (+) True G87482
TU109237 lncRNA downstream 126747 24359504 ~ 24360909 (+) True G87525
TU109347 lncRNA downstream 701666 24934423 ~ 24935826 (+) False AMCG00021676
TU109409 lncRNA downstream 1134218 25366975 ~ 25372339 (+) True AMCG00021682
TU109467 lncRNA downstream 1296567 25529324 ~ 25529585 (+) True G87704
AMCG00021657 mRNA upstream 22094 24183208 ~ 24198827 (+) True AMCG00021657
AMCG00021656 mRNA upstream 42829 24174403 ~ 24178092 (+) False AMCG00021656
AMCG00021654 mRNA upstream 48040 24152064 ~ 24172881 (+) True AMCG00021654
AMCG00021655 mRNA upstream 85874 24128999 ~ 24135047 (+) True AMCG00021655
AMCG00021651 mRNA upstream 191348 24020865 ~ 24029573 (+) True AMCG00021651
AMCG00021659 mRNA downstream 41338 24274095 ~ 24276540 (+) True AMCG00021659
AMCG00021665 mRNA downstream 110095 24342852 ~ 24353253 (+) True AMCG00021665
AMCG00021664 mRNA downstream 139110 24371867 ~ 24377488 (+) True AMCG00021664
AMCG00021671 mRNA downstream 211550 24444307 ~ 24457362 (+) True AMCG00021671
AMCG00021672 mRNA downstream 281361 24514118 ~ 24522275 (+) True AMCG00021672
TU109135 other upstream 42931 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 2984841 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 2989433 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 2989433 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 3055889 21158624 ~ 21165032 (+) False AMCG00021551
TU109403 other downstream 1044019 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 1919311 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 4545558 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 4828130 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 5145818 29378575 ~ 29382273 (+) False AMCG00021779

Expression Profile