RNA id: AMCG00021663


Basic Information

Item Value
RNA id AMCG00021663
length 4346
RNA type mRNA
GC content 0.47
exon number 19
gene id AMCG00021663
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24261901 ~ 24277596 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tggaatctgattgactgattgcttctgtggacaggtgtcttatATACAgataacgagctgagattaggagcactccctttaagagagacacctgggagccagaaatcttgctgattgataggggatcaaatacttttttccctcactgtagttcttactaacacacaacatcacaaacaaaattgtttatttttatttgagaagaaaaaaaatgaattctctCCAAGTTCTGAAAAACTTTTGATAAAACATCCTGCCACAGTCCCAGTCTTGAATTGCAAATGAAGGACATGTACTGCACAGTTACTCCAAAGCAGAAGCACTTCAGATGAAAGACCGAATAAAAACCCTtttatacaaaacagaaattcaAACATCTTTTAGAACAAAAGACCATGTAGGATGTAATCAGTGTCTGACCAATTTTAGCGATGCCCATAAATGATTAGGCATTACTATTCATATTCAAGTAATGCTCCAAAAATGTTCTTCATGCATTTCAGGTTCTCAAATGGATGAATTGTCAAAACACATCTCAAGATAATCTGAAGGGATGTTGCTCTACTCTTCTCTTTATTGTAGAATATAATGATCGTttcttgtgtatatataggtatataatTACGACATAGTTTTACATAGTGCCCAGCAATGCCCTGGCGTCGCGTCCTGGGTGTAtccctgccttgcgccctatgcctgctgggatcagctccgGCTTCTCCGcgaccctcgccaggataagcggtttcgaaaatagaaggatggatggatggatggatgtttaacatagtttattttaacaaagtttATTGTATAGAGTgcattgtatattatttattgcacCTCTATTTCCTATGCTTCCCAGTACTTTACCTTTGCACAATCATTTTGTTGCACTGAATGTTTGTTGCATTTTGCAATTCTGTTTAATACTGTGCTTGCTTTTATAGTTACCTATTATAATAagattattatgaattaatattatgatagtatcaattttttattttatttatttttttaagcattcacTAAAATCAGATCCCCAGACTTTCAGTCCTTCTCGTAATGTCTTCCATACAGTGTAGCTGTGACAAGGCCaccagaaatgtgttttttactCATGACGTAGCTCTCCTTCTCCCAACCCACCCTGTCTGGGGAATCAAGCTGCATGCCACTGGTTAGGATACTGGGGTAAATGTAACGGGTGCTAAAGTTGCCCTCTAAATGGAAATCTATTGTGGTGATGGTTTGATCTCCAGCAGTGACCTCCCCCCCGCAACTGGCAAAGGTGTCACCAGGACATCTGACCAGAGCGCACACCTCTAGATAAAATTGTCGAGCGGCCGTGTGTAGGCCATTGAAGACTCCAAAAGCGTAGAGCTCCTCAGGGACATGGGAGCCATTGTACAACAAACGGCAGCACAATGAGCCATCGCACACGGTCAAATCTCCCTCTGCTCCTTGTACAGGAACAAAGGTGTAATTATCTGAACTCATACTGCCATGGAATGTTCCAGGGGCTGCCCCATCTGCTACAGGTTTTGATGCTGAGGGTTTTCCACAATCCTGGGACTTCATGCAGACCTCGGAGGTAGGTGGTGAACCTGTCTCAGAGTCAGTAGGGAGTGAAACATTGCTCACCAGCAGTCTGCCTTTATCCGTTTCCATGTCAAAGTGGTAAACTGAGTGTGAGGGCGTGAAAATGCCACTCCCAGTCATGCGGAGTGGAGGGTGATGCAAATTAGCTGCTAGGAGGTTAATTCCCGAACCTGTGGCAAATGCTTTCTGGAACTGATGCGCAGACAGCAGGGGGGCTTCGTTAAACCAGGCCGTGGGAAagatcatttgttttacttgatACTTTTCTAGAAGGGTAATGACCGGTTCGTGGAAGAGAATGTCGAAACACGTGAAGAGGCCAAACCTCCCGGCGAATGGAGTGTCAAATGTGACGTACTCGCATTCTCTAGGGGTGTTAAATTCAGATTCAAAATACAGGTTTTGTTTATGATACCTGGCCACTATTGTTCCATCATCACTGAAGACGACATCCGTATTGAACTGATATCTGCCATCTGGGGGGCAGTGTGGATCTGTGCTGTCACATTCTTGGCGATCGGGCATATTTGCCACTAAATACACTGCATGCTTGTGTGCCATACAGCTCAGCCGATGAAGAACCTCAGTGCCATTGAACCTCTCTGGCTGAAGACAGGGGCTCCAGCTCATTGAGGCCGGATCAGGAATCGTCTCCGAATACGAAACAATGGACTCTCTAGTGTAGTTGAAACCATGGAGTCCGTCTTCTGGAAACACTATTATCTGTGCGCCCTGTTTTGCAGCTGCAGCCACTTGCTCTTCATATATATCCAGGTTCTCTTTCATGTGATCCAGCGCTGCCTGGCGACTGCGAGGAACCTTGGGGTCGGGGTTAAAGATGATGTTGTGCTCATAAACAGCAGCGATATAATGGGCTCCTTCGCTGGCCTGGGAGAGCCCaaaggagcactgccagagagCAGCGATCTTTATCAGCACAGACAGCTGCATTGTCTTTGGCAAACTTAAACAGCACAAACTCACACATTACTTCCCTACATCTTCTCTTCGACAGACTCCgggcactttttattttcttcgaCACCTGCGTACTTACGTCACACGTTCGTTCCCAGTGCAATCCTGATTGGCTTGACGTCTCTTACGTCACGCACGTACGATTGCTGATTGGTCGATACGTGCTCACGCCCTGGGTTGTTGTTGGCACTTTGCACCCTGATCTTTCAAATTCATTTCCCAGccagagacggagagagatggaggagatAACAGGAGCTCAGATAATTGCTGAGGCTCTCAGAGCGCAAAATGTGGAATACATGTTTGGGATAGTTGGTGTCCCTGTGATAGAAGTTGCAATGGCTGCCCAAGCTGCAGGGATTAAATACATTGGGATGAGAAACGAACAAGCGGCCTGTTATGCTGCCTCTGCTGTGGGATATTTAACAGGAAGacCCGGAGCTTGTCTGGTTGTTTCTGGTCCAGGACTCATCCACGCTTTAGGAGGAATGGCAAATGCTAACATGAACTGCTGGCCGGTGGTCGTTGTTGGGGGCTCCTCTGACCAAAACCAGGAAACAATGGGAGCATTTCAAGAGTTTCCACAGgTAGAGGCGTGTAGACTATACAGCAAGTTCTCTGCAAGACCCAGCAGCCTAGAAGCCATTCCAGCAGTGGTTGAGAAGGCGGTCAGATGCAGCACATATGGCCGTCCAGGTGCCTGTTATATTGATATACCTGGAGACATGGTAAATGGCAGAGTGGAGAGGGCAAAAAGTTGTGCCATGTTGCCTGCCACCGCCTGTGTCCCTAGCAGAGCCCCAGGCCATCTCTCAGgtgcTGCCTATGCCCATGCTGAAAGTAACATCCAGAACCTGTTGGATCTTACTGGGTTTCCATTTTTGCCCACCCCAATGGGCAAAGGAGTGGTGCCAGACAGCCATCCAAACTGTGTGGCAGCTGCAAGATCCAGGGCTCTTCAGCAGGCTGATGTGATCTTGCTTCTAGGCGCCAGACTGAACTGGATGCTGCACTTCGGTGTTCCTCCACGCTTTCACCCTAATGTGAAATTCATTCAGGTGGATCTGTGTGCCGAGGAGCTGGGCAACAACGTCCGGCCGGCTGTGGCTCTGCTAGGGGACGTCAATTCGGTTGTTGAACAGTCGTCGGTTCCCATGAACTACTATACTGTGTTTCACCACGTCCGAGAGCTGCTGCCAAAGGACTGTGTCATAGTCAGTGAGGGAGCAAACACCATGGACATAGGACGCACCATGCTTCACAACTACCTCCCACGCTGGACGCTGGCACGTTCGGGACAATGGGAGTGGGCCTTGGATTCGCTATTGCTGCTGCAGTTGTTGCCCGAGAGGAAGACCCTGCAAAGCGTGTGGTACAATTTACCAATAATCATCATTGTTGTCAACAACAACGGGATATACAGTGGACTTGATAAAGACACAtggaaggaaatggaaaaaattgGAGATCTAACCAGTGTTGCCCCCCCCGTGTCCCTTCTGCCCGAGGCCCGGTACGAGCAGGTCATGGCAGCGTTTGGGGGGAGAGGATTCTTTGTCCAGACACCTGCTGAGCTGCAGGAGGCCCTCAGGAAGTGCCTGGCAGACCCGGAGAAACCCTGTCTTATCAATgaCTTTCCCTGGCTGACCCGCTCTAATCTGTGAGGCGTTGAGAAGAGCTTTCACAGACCTTGTCAAGTCAGAACAAATGATGGTCACAGATCAAACCATTAAAATTGTATcatatgtaaatgaaaa

Function

GO: NA

KEGG:

id description
K12261 HACL1; 2-hydroxyacyl-CoA lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109159 lncRNA downstream 60200 24199536 ~ 24201701 (-) False AMCG00021662
TU109120 lncRNA downstream 128590 24080736 ~ 24133311 (-) True G87428
TU109118 lncRNA downstream 184794 24076899 ~ 24077107 (-) True G87427
TU108976 lncRNA downstream 763140 23495319 ~ 23498761 (-) False AMCG00021634
TU108960 lncRNA downstream 773689 23482972 ~ 23488212 (-) False G87287
TU109205 lncRNA upstream 1041 24278637 ~ 24279387 (-) True G87495
TU109241 lncRNA upstream 82070 24359666 ~ 24363369 (-) False AMCG00021668
TU109295 lncRNA upstream 268486 24546082 ~ 24548123 (-) True G87573
TU109365 lncRNA upstream 709846 24987442 ~ 24989739 (-) True G87627
TU109358 lncRNA upstream 710805 24988401 ~ 24994242 (-) True G87622
AMCG00021661 mRNA downstream 5278 24237275 ~ 24256623 (-) True AMCG00021661
AMCG00021660 mRNA downstream 41223 24215868 ~ 24220678 (-) True AMCG00021660
AMCG00021662 mRNA downstream 51696 24199548 ~ 24210205 (-) True AMCG00021662
AMCG00021652 mRNA downstream 187929 24056803 ~ 24073972 (-) True AMCG00021652
AMCG00021653 mRNA downstream 207029 24052590 ~ 24054872 (-) True AMCG00021653
AMCG00021666 mRNA upstream 1996 24279592 ~ 24307071 (-) True AMCG00021666
AMCG00021668 mRNA upstream 65304 24342900 ~ 24363459 (-) True AMCG00021668
AMCG00021667 mRNA upstream 89129 24366725 ~ 24369123 (-) True AMCG00021667
AMCG00021669 mRNA upstream 104441 24382037 ~ 24412448 (-) True AMCG00021669
AMCG00021670 mRNA upstream 158611 24436207 ~ 24445238 (-) True AMCG00021670
TU108932 other downstream 923417 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 1100924 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 3178331 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 3537021 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 3864118 20395612 ~ 20397783 (-) True G86649
TU109433 other upstream 1126054 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 1627848 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 1813658 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 1874509 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 2633878 26911474 ~ 26919844 (-) False AMCG00021723

Expression Profile