RNA id: AMCG00021664


Basic Information

Item Value
RNA id AMCG00021664
length 816
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00021664
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24371867 ~ 24377488 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGcatcaagaagaaaaacagatcatCTGGAGAGAACTGCTGAAAAATATCGACAAGACgtgcTGTTTCCAGCAAAAGTCTGTGGAATTCTTGATGAATCGAACAAAGTCAGAAGACTCCGTCTGGCCGTGCCAAATAAAGACTTCTCTTTTAAAGCGGGACAGTGGGTGGATTTCTATATTCCTGGCTTTCCCAAAGTTGGTGGCTTTTCTATCTGCTCCAGCCCAGGCCTGTTACAGAGAGAGGGGGTCATTGAGCTGGCTGTCAAATACAGTGAGCATCCCCCGGCCCGCTGGATACATACAGAGTGCACCCTGGACTGTGAAGTTGCCGTGCGAGTGGGGGGGGACTTCTATTTCGACCCCCAGCCCTCTGACTCCGCTGTGAACCTGTTGCTGGTGGCGGGAGGAGTGGGCATCAATCCTCTGTACTCCATCCTGCTGCACGTGGCGGACCTGCACAGACTGAGGCAGTGCGAGGACTCGGGCTACGAGCCGGGCTCAGTCCAGCTGTGCTACAGCGCCAAGAACACAGACGAGCTGCTCTTCAAGAACACCATTATTGGACTTTCTAAAGAGCTGTCGGGGAAGTTTTCCTGTGACTTCCACGTGACACAACAGGACACTGAAATCAACATGCAGCTCAGACCATACGTCAGTGAGGGAAGGATATCGGAACAAATCCTGCGGCAGCATTTATCAACCGACGCCCTGTGCTACATCTGCGGGCCACCTCCCATGATCCAGTCCGTCTCGGAACAGCTGCAGCACCTGGGGATCTCCAAGGAGAAGATACTATTTGAGAAGTGGTGGTAG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109237 lncRNA upstream 10958 24359504 ~ 24360909 (+) True G87525
TU109188 lncRNA upstream 110250 24260962 ~ 24261617 (+) True G87482
TU109160 lncRNA upstream 153043 24216374 ~ 24218824 (+) True G87464
TU109140 lncRNA upstream 173069 24195128 ~ 24198798 (+) False AMCG00021657
TU109111 lncRNA upstream 232359 24080736 ~ 24139508 (+) False G87423
TU109347 lncRNA downstream 556935 24934423 ~ 24935826 (+) False AMCG00021676
TU109409 lncRNA downstream 989487 25366975 ~ 25372339 (+) True AMCG00021682
TU109467 lncRNA downstream 1151836 25529324 ~ 25529585 (+) True G87704
TU109518 lncRNA downstream 1375565 25753053 ~ 25753253 (+) False AMCG00021692
TU109541 lncRNA downstream 1454966 25832454 ~ 25832988 (+) True G87765
AMCG00021665 mRNA upstream 18614 24342852 ~ 24353253 (+) True AMCG00021665
AMCG00021659 mRNA upstream 95327 24274095 ~ 24276540 (+) True AMCG00021659
AMCG00021658 mRNA upstream 139110 24220921 ~ 24232757 (+) True AMCG00021658
AMCG00021657 mRNA upstream 173040 24183208 ~ 24198827 (+) True AMCG00021657
AMCG00021656 mRNA upstream 193775 24174403 ~ 24178092 (+) False AMCG00021656
AMCG00021671 mRNA downstream 66819 24444307 ~ 24457362 (+) True AMCG00021671
AMCG00021672 mRNA downstream 136630 24514118 ~ 24522275 (+) True AMCG00021672
AMCG00021676 mRNA downstream 532396 24909884 ~ 24949100 (+) True AMCG00021676
AMCG00021678 mRNA downstream 609989 24987477 ~ 25007730 (+) True AMCG00021678
AMCG00021682 mRNA downstream 901721 25279209 ~ 25371526 (+) False AMCG00021682
TU109135 other upstream 193877 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 3135787 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 3140379 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 3140379 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 3206835 21158624 ~ 21165032 (+) False AMCG00021551
TU109403 other downstream 899288 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 1774580 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 4400827 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 4683399 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 5001087 29378575 ~ 29382273 (+) False AMCG00021779

Expression Profile