RNA id: AMCG00021665


Basic Information

Item Value
RNA id AMCG00021665
length 1956
RNA type mRNA
GC content 0.54
exon number 9
gene id AMCG00021665
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24342852 ~ 24353253 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGATTGAGGTGCAGGTACAGATTGTGTAGGCTGCAGTTTGTCTTCTTATGGTTGGTGTTGGGGTTCCTGGCGATGATGGTGACTTTTCTCGACCCTCTTTTCGGTGAACTTTCCAAGAAGCCGCTTCTTGTTCCGCGACACCAGCCCGAAGAGCGTCCCTGCGCCGTGGACGATGTTCTGGACCTTGATGGACTGTCCTCCCTGGGATCGCTGAAGGAAGACCAGCTGATCATAGTCACATCGAAACTGAGAAGTCAAGCAGATCATCCGAAGCAGGGGAGGTACAGGGTGCTGAGGGCTGGAGGCAGAAAAGAGACAGGCATGTCGCAGTCCACTCACGGGGATCTGGGCAAACCTGTGCACCTCTCTCTGCACGGGTCCGAGAGGGACCTGGAGGAGTCGGGACTGAAGAGACATGGGTTTAATGAAGTTGTCAGCGAGAAGATCTCTCTACACAGACGGCTGTCCGAGGTGCGTCATCCTTTGTGTCTCACACAGCAGTACAGCACACACTTGCCAACAGCCAGTGTAATCATCTGCTTCCACAACGAGGCCTGGTCCACACTGCTGAGGACAGTGCACAGTGTCCTGGACACCGTGTCTAGGGAGCTGCTGAAGGAAATCATACTGGTGGATGACCTCAGTCAACAAGGCCATCTGAAGACAGCTCTCAGTGAGTACGTGGCCCAGCTTGAGGCCGTGAAGCTGATCAGGAGCAACAAGCGCTTGGGGGTTATTGGAGGCCGGGGGCTGGGGGCGGCACGGGCCTCCGGGGATGTGATCGTGTTCATGGACTCTCACTGTGAGTGTCACCCAGGCTGGCTGGAGCCACTGCTGGATAGAATAGCAGGAGACAGAAGTCGGGTCCTGTCCCCAGTGATCGACAGCATCAACTGGAACACATTTCAGTATCATGGCTCCCCACATCCACAGAGGGGTGTGTTTGACTGGAAGCTGGATTTCCACTGGGAGCCTGTGCCCAAATACCAGCAGAAGAAACATGAATCCCCTATCCACCCTGTCAGGAGCCCTGCTTTGCCGGGTGGAGTCCTGGCTATCGAGCGTCACTATTTTCAGAGGATTGGAGCCTACGACCCCGGCATGACCTTATGGGGATTGGAGAATGTGGAGCTGTCCATCAGGGTGTGGCTCTGTGGGGGTTCCATGGAGGTCCATCCTTGTTCCAGAGTTGGACACCTGTACCGCAGTCACATCCCCTACTCTTTTCCTGATGATGACATGGTGGAGAGAAACAAGATTCGTGTGGCTGAGACCTGGCTAGACTCTTACAAGAGGATTTTTTACAAGCGAGACACAGTGGCCTACTTTATAAGCAAGGTGAGGGATGGAACATCTATTTTTCTTGCATGTGTTAGTTTTGTcatgtatgtgttatttattttattcgcTGTGCTCACTAGGCAGAGAATGCAAATTGTACGGAAAGACTGCAGCTGCGGAAGCGGCTTGGATGCAAGAACTTTCATTGGTTTCTGTCTGACGTCCACCCAGAGCTCTACATACCACAGGATACACCTGGCCACTCAGGAGAGGCAAGACTCACTGTACAATGTTGGCACTGGCTATTGTGCAGATCACAAGAATGGGTGGAGTACGATGGAACAGCCCATGGACATTTCACCCTGCAGTGGAAATGGAAATCAGCACTGCGAGTACAACACGCTGAGGGAGATCCGATGTGGCTCGGCGGGGCAGCTGTGCTTGGATGTGAGACAGGAGCGGGTCACTGTGGCCGCTTGCTCCCTGAAACAGCACACCCACCTCAGGCAGCAGTGGAGAGTGCACAGCGGAGAGATAGTGCACGTGGCGTCTGGCAAGTGCATGGAAGCAGTGGACAGTGAGGGTGGGAGGGGCCTGTTTCTGAGGGCGTGCAGTGCCGCCCCCCAGCAGCAGTGGCTTTTCGAGCAGCTGATTGTCCTGAATGAAGGTTGA

Function

GO: NA

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109188 lncRNA upstream 81235 24260962 ~ 24261617 (+) True G87482
TU109160 lncRNA upstream 124028 24216374 ~ 24218824 (+) True G87464
TU109140 lncRNA upstream 144054 24195128 ~ 24198798 (+) False AMCG00021657
TU109111 lncRNA upstream 203344 24080736 ~ 24139508 (+) False G87423
TU109237 lncRNA downstream 6251 24359504 ~ 24360909 (+) True G87525
TU109347 lncRNA downstream 581170 24934423 ~ 24935826 (+) False AMCG00021676
TU109409 lncRNA downstream 1013722 25366975 ~ 25372339 (+) True AMCG00021682
TU109467 lncRNA downstream 1176071 25529324 ~ 25529585 (+) True G87704
TU109518 lncRNA downstream 1399800 25753053 ~ 25753253 (+) False AMCG00021692
AMCG00021659 mRNA upstream 66312 24274095 ~ 24276540 (+) True AMCG00021659
AMCG00021658 mRNA upstream 110095 24220921 ~ 24232757 (+) True AMCG00021658
AMCG00021657 mRNA upstream 144025 24183208 ~ 24198827 (+) True AMCG00021657
AMCG00021656 mRNA upstream 164760 24174403 ~ 24178092 (+) False AMCG00021656
AMCG00021654 mRNA upstream 169971 24152064 ~ 24172881 (+) True AMCG00021654
AMCG00021664 mRNA downstream 18614 24371867 ~ 24377488 (+) True AMCG00021664
AMCG00021671 mRNA downstream 91054 24444307 ~ 24457362 (+) True AMCG00021671
AMCG00021672 mRNA downstream 160865 24514118 ~ 24522275 (+) True AMCG00021672
AMCG00021676 mRNA downstream 556631 24909884 ~ 24949100 (+) True AMCG00021676
AMCG00021678 mRNA downstream 634224 24987477 ~ 25007730 (+) True AMCG00021678
TU109135 other upstream 164862 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 3106772 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 3111364 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 3111364 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 3177820 21158624 ~ 21165032 (+) False AMCG00021551
TU109403 other downstream 923523 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 1798815 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 4425062 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 4707634 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 5025322 29378575 ~ 29382273 (+) False AMCG00021779

Expression Profile