RNA id: TU109241


Basic Information

Item Value
RNA id TU109241
length 895
lncRNA type sense_over
GC content 0.47
exon number 3
gene id AMCG00021668
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24342900 ~ 24363459 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTTGACTAAGGATGGAGGGGGCTGAGGGAGGACAGAGTGAGGAATACCACTGGGTAGAAATGATTAACTATGAAAGCTTGTAAAGTATATTCGATGTAGGTTAAGTATCTGGAGTCAGTCTGCCTTTTCCCTCCAGTGTCCCAGAGTTTGCAGATTGTAACTGTGTTGGAATAACGATGTTACTCCTTAGTTCTCTTTCCCTTCTTCTTGTGCTCTACCCTGGTAGCTTTCTTCAGCAAGTGGAAGCAGCCACTGTTGGGAGATCTTCCTATTCCAAAATATACGTCCCAAATGGAGGATGATGGGGATCATGGACTTGGAGAGAAATGTGTCCAGATGGCTACTATGCTATATGATTCAGTCTGAGGTTTCGGAGATTGGACACAGACCCAGTGGTGTCCCGGCAGCGGTGTCCTCAAGTCCTTCCAGCTGAGAGTGGAACAGCCTCAAGGGTCTGGTGATGACACTGCGGCCAACAACATTAGGTTCTGCTGCAGCAGCAACCAAATTATTGAAGGGCAGGGTCTCGGCTGGGGAGAGTACGGCAGCTGGAGTGAGGAATGCCCACGAGGAGGGATCTGCGGCATAGAAACCAAGCAGGAGCCAAGGCAAGGTGATGGTGATGACACAACCTTGAACGATGTGCGCTTCTTCTGCTGCGCTTAGGACTGTGGATCCAGCTCTGGTCACCACTGGCCTGGTGCACTCATGAAGGGCAATTTGAGATGGCTAATACTGGAGGACAACATCTGGACATCCATTCCTGCTGTCTTGGGAATCGTTACATCCCCCTGCAAGTTTTAAATaccagtttaaataaatgaaaaacaacaacaatgcttttgtcatttgatttctttttaatctgAATTTGAGAAATCCATATTAAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109205 lncRNA downstream 80279 24278637 ~ 24279387 (-) True G87495
TU109159 lncRNA downstream 157965 24199536 ~ 24201701 (-) False AMCG00021662
TU109120 lncRNA downstream 226355 24080736 ~ 24133311 (-) True G87428
TU109118 lncRNA downstream 282559 24076899 ~ 24077107 (-) True G87427
TU108976 lncRNA downstream 860905 23495319 ~ 23498761 (-) False AMCG00021634
TU109295 lncRNA upstream 182713 24546082 ~ 24548123 (-) True G87573
TU109365 lncRNA upstream 624073 24987442 ~ 24989739 (-) True G87627
TU109358 lncRNA upstream 625032 24988401 ~ 24994242 (-) True G87622
TU109455 lncRNA upstream 1049035 25412404 ~ 25415088 (-) False G87694
TU109456 lncRNA upstream 1049035 25412404 ~ 25460562 (-) True G87694
AMCG00021666 mRNA downstream 52595 24279592 ~ 24307071 (-) True AMCG00021666
AMCG00021663 mRNA downstream 82070 24261901 ~ 24277596 (-) True AMCG00021663
AMCG00021661 mRNA downstream 103043 24237275 ~ 24256623 (-) True AMCG00021661
AMCG00021660 mRNA downstream 138988 24215868 ~ 24220678 (-) True AMCG00021660
AMCG00021662 mRNA downstream 149461 24199548 ~ 24210205 (-) True AMCG00021662
AMCG00021667 mRNA upstream 3356 24366725 ~ 24369123 (-) True AMCG00021667
AMCG00021669 mRNA upstream 18668 24382037 ~ 24412448 (-) True AMCG00021669
AMCG00021670 mRNA upstream 72838 24436207 ~ 24445238 (-) True AMCG00021670
AMCG00021673 mRNA upstream 189648 24553017 ~ 24568180 (-) True AMCG00021673
AMCG00021674 mRNA upstream 231528 24594897 ~ 24609459 (-) True AMCG00021674
TU108932 other downstream 1021182 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 1198689 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 3276096 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 3634786 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 3961883 20395612 ~ 20397783 (-) True G86649
TU109433 other upstream 1040281 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 1542075 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 1727885 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 1788736 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 2548105 26911474 ~ 26919844 (-) False AMCG00021723

Expression Profile