RNA id: AMCG00021669


Basic Information

Item Value
RNA id AMCG00021669
length 5638
RNA type mRNA
GC content 0.44
exon number 8
gene id AMCG00021669
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24382037 ~ 24412448 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aGGTCGAGGGGTCGTCAGCCCTCTGCCTGCGCTCCATGCACGAGCTGCCCGCCCAGCTGCACGACCTGTACCAGCAAGGCTTCGTGCTGACCGCCGTCCACTCCTTCATCCACCCGGCCGgccaggaggagggcagcatgcagcagcggcagcaacagcagctcTACCGGGCTGTTCTCATCAAGCTGGCTGAAAGctcagaaaacaaacagcaaaacaatGATCCCCATAGACTGGAGATGGATATGTGCCTGTCCTCCAACGACTTCCCCGACACCGATGTAATACAGGGCTATATGAAAAAAGTCCAGGACGCTGCGGAACAGGGAGTGACTTTTGTGGGCTTCGTCCAGCAGCACGGCTTTCCGCTGACCTCTGACGCCCAGGAAGACAAAACGCTGTCACTGCACTCCAGCCCGAGCTCTGCGTTCGAGACCTTGGAAGACGGGCCAAGCGTCAACCTAGAGCTGGAGGCTGCAACGGAGGAGGGAGGATGTGGGTCGGGACAGGGGCCGGGGACAGAGCGGGAGACGTCCCCTCCGGCGCTCTTGAACGAGAACGAAGGACAGGCCGACGTCGCGGGCAGTGGGAATAATGGCAGTGAACAAGGGGAGGATTCTTCTCAGCACCCCTCAGATGGACTGACAGACCCACCCACTGACGATGCACAACAACACAAGGACACGGAAGAGGCCCCCGAAACCGACACTCTCACTCACAATAACAACAAGGAGAAGCCGACGGAGGGGGAGCCCAAACTGACCAGCCCAACGCAGTCCAATAAAgTGAAGGTGCCCTTGAGGATCCACAAGAAGGCTGAGAGTGTGAGCAGTCTGGAAGCCAACTGGCTGGATCACATGACCCAGCACTTCACCAACGGTGCCTCCCTAGTGGACGGGTACTTCCATCTTGGACCCGAAAACGATTCTTTGCCCAAGTCGGTTGACGGGGATTTCATCTTTCAAGAGGATGTGGAAGTGGATTCCTCTGCAGTGCAGGCTTATGATGCCATTGTCGTGGAACAGTGGACTGTTTTTGAAGGTTTTGAAGTAAAGACAGACTACATCCCCCTGTTAAAGTCCCTTGCCTCATATGGTTGGAGGCTGACGTGTGTGCTCCCTACTCCAATAGTGAAGACAAACAGCGAAGGCAATCTGGCGACAaagcagattgtttttcttcagagaCCCTTCCTACCCCGAAAGAAGAAGGAATCCAAGAAACTGAGTTTCAAAGCACTGAGAAGTTCCAACAAAAACTCCATCAAAGATGCCccgaaaaacaaaaagaaaaacagcagcgCAAAACTGACACCGAAAGAGTTGGAAGACCAGAAGATTGTAGAAGACGTGGAGAAAGGGGACACAGAGGAGAGTGAGAAAGGCACTGGAAAAGAGGGGAATGAGAGTGGAAACCAGAGGAGTGCAGAGGAGGAGGCTGGAGAGGACGCTGAGCCGCAGGACAAAATGGACACTGAGGATGAGTGGAAGGAAGAGACGGGAGAGAACGAGGAGCCACATGCAGGAACACAGGACAGCGAGATCTGCTGTGAGATGCAGGGAGCTGACGTGAGTGAAGCGTCAGAGCCGGTGCAGGAGACGGCGAGCTCTGACATCCCACAAGACAACAGCAGCTGCCCCGACATCTCACAGGACCTCAGTCTACACATCAGCATTGACTAAGACCGGGCAGCACTGCCGTCTTCACACCATTTACAATGAGGCTTCGGTATTCAGTGAACGGTCCGCTCTCTGCAGCCACCCGCAGTTAGGTTGGAGCGATTTTCAGTGGGTAATTGGCATCTAATTGGCATCCCTGAGGTCATTCATCACCTGTGCTGCATTCCTCACCATTCCTCTACTATATCTGTCTTATAAATCCagaaataaaagatgaaagaaTCTTTGAATTGGTTTTAGTTGTGTTAGTTGGAAAGTGTGCTTCTCTCTGTTTCGTGGAAAAGGGTTGGAACTTTTGGAGTTTTCTTgccatactttttttttttaatgaaaaaatctataatgaatattattttaaatatatatgtatatatatcagcaCAAAAAGTGTTGGTGGCACTTTGTGAAATGATCACAACTTCCAGTGCTTTTGAGTTGTGTATATAGTCAGCATTCCTACTTTTGATCCCAAGATAAATCCATAGAAAGATGGCTTTGGCGTACCCTGCCCATATCCGAGTGTGTGCAACACAGATGTTCGGGTGCAAATAAACAGTACACAGGCTATAGCCTGTGGGTTTTCTTGATCAGGCTGCAGAAAGGATAACACTGATGTTTATGGATATTTAAGCTATTCTCTTAAGTGTATTGTAATCGTAGGTCTGCTTGGAAATGTATGTGTGCCGCTTATTTCAATATTGACGCTGATGGGACCAATTGGAGGCATTTTCAAcattgcacttattttgtaaaGGATCTGCAGAGTAGGCCCCTACCAGGAAATAACAGCAAGACTGTGTTACGGATGATCCCCCGCAGGGCAGACTTTCCAGgatcaaattaaatctaaaaacagCTTGACTAATGATAATGAGCTTGTTGAATTTGTGTGGCAAGTTATAACAAGAATCGTGAATTACTTGAACCTAGAATATTGCtatgtttcatttgaaataatcaaAAGTGACCTTTGACAAGCGTTTATTGATTTTGCAGCTGAGTGCTTAACGTGAGGCAGGAGGGGAATACTCTGGtggcagtagtagtagtgtgttactgtgtgtattttgttgtaaCACTATGGTGAAAGTTATCtctatgtaaatgtattctACCCTGAACAATGTTGAGTGGCGGGCCCACCAGACAGACCTTTGAGTCGGCTGTACGGCATGATCTCAGCACAGGCAGTTCCGATTCCTCAATCGATTGAAAAGCTAGATGTATCTACATTGGATTGGTGTCCATCGGTAGTGGTTCTGAAGATTTGTGTAATAACGTATCTCGTCAAAACCTGCCATGTAAAGTGCTGTACTTTGCATTtccaaacatgaaaaaaaatgtttgtatcaAGGTCTGTTTTAAGACTGGTGATGAAATCCGCttaaagaatatttaaaatctgcGGCTGTTATACTTTAAAGGTATAGGAACAGCATCACCAAAGCTActttttgctcttttttatACTTCTTAACCTATCCATCGAAATATCAGATATTATGGAGTTAAATTCTTTTCACAGAACATATGTTTTAATAGTTGAGTGGTcatgttttaaagtattttatagattttccaCTGTCTCAAACAGGTGGAAATGATTTTATGTACACTATGGTTTGCCAGAGTAAGTAAGTCAAATCAAATAGTTTATAATGGTTTggaccttttttcccctcatttgcTCTCAGAAAATGTATAGGGATTTGGAGAATTCTTCTTATattgtatttctatatatacagagagaaatGCAAAGGATGGAAAAGTGCGGCTCCTCTGAACGGTTGCAAATCACCAGCAACTGAAAGTGATGAGGATTAAAGGATTAAAAATGCTGGGTTTCATTAGAAGATctgaacacacaacaacaactaaCACAATTGAAACAGGGTtttgtttgcctgtgtgtgtgagagtgcatTTTAACATTGAGCTTTGTATCATTGACGACAAAGGCctggtaaatatttaaaaataaaatatgctggAACCATTGTAATTTGCCTTTCTATGAAATGAATTGTGTTGCAATGGAGAACCTATTTACAAAAGTACATATCCCTgttctttcacttttatttaaatggtaGCATCTTTTTGTGCTGATCTTTAGTAGGCCAGTGTTGTCAGGATCCAGCCATAGCCCAGCGATCATGGTTTTGGCTCAGACATAGACTAAATAATGAGTTACTGATTCcaacaactgaaatgccttttttttaGGACgctaaaagtaaaaaaaaatgacaagttCTATCTGCATTAGATTAAGCATCAGATTTCAGTCTTCAGATGTTAATATAGTCTCAAGCAGTGGAATAGCTACTTAACTATTGAGCTATAGGGCGGAGACAGAGGCCTGACGGGTATAGGAACTGTAGTGTAATTTAACTAAGGTGGTCCCCTATTGGCAACAATATCTAGCATTATAACAGAGACCTGTGAAGAGAAGGTGTAATTTTGCCAGCATTGTTGCTGACTCACTTACAACTTTTCCTAGCAAAGCCAGCAATTCAATCCACATACTTTGGTTTCTCCTGCCAGCTTCCCCTGTTGGCTTTGTCATAATTTGGCCAGCAGGTGTGTTCTCCTACACTGGCTCACCAGACCACCGCAGTCTAGGTCATACGCATGACTTGTACTTGTTTGTACGGCACCAATAAGGTCACATCGCGATGCATGTTATTGCAGTAAAGTCGTCTGTGATGTCACCAaagcaaaaactgaaaattCGTGACTGCAGTGCTCACGGTTGAAGGACTAATCGAATGCAGTTGAGTTCCACCCCCATGTTCTCTGGAATGTACCTGGGGCGAGTTGTACTGTAAAATAGGGCACACGCTGTGGTAATAAACTAATGCCGCAGAGGAAATATTCTTGCAACATGCAGTACGCACAGACCTTGCATTTCCACCCCCAGAGTAGTCGCAGTACAAGGCGGACCTCCTCCGCGGCAGGTTTGGCTCAGTAGGCTGGAGCAGAAGTTCAGCGGATATAGTGAAGTGATTGTTTTACCTTTTACCACAGTATTACAGGACGATACAGCAACTGATGCAACCTCCAAGACATTGTAAGGCAGGAGAGATGTGACCTTGGCGCAAATACTGCCTTACATTACGTTTCCAGATGTAAATACACTATAGTCTCTGCACCAGTACCCGGTCACGACGACACAGGCACCAGCTTCACTGTGATTCATAAAAGCGTGGGTCCACATCACCTTGAGTCAATAAGGGAAGCGCTGAGTCTCAAAATAATCATGGGACGAGGCATCCCTTAATCCTTTTTATACAGTGTTTACTCCGAGGAGCAATGCAGAGCCTCGGTGTAAAGCAGTTTCTGCAGTATGATTGTGTAGTTTGATACTGACTGTTGTTTGGACCACCTTGTCTGAAAGGCAGGTGGTACTCCTTTAAACTGCTTCCTGCATCTGTGTGTAGTCTACAGTGTTTAGAAATGAGCAGTAATGCCAGTTTCATAGTTTAAAATTacttacagaaaacatttgttgtTAAATGCTCCTTTCCACAGTATGTACTAATGTttgtgaaaaatgcatttgtaagtgTTGGCACAATTGAAGTAAGTCTTAAAACGCTTCAGCTATCTGTAATCTATGCTGTAATAGGCTTTTTCGTGGCTTTTTGAGCATAGAATTGCTTTTGGAGTAAAGTGTATTTCAGCCAACCTCCTCTACATTGTTTTCACTACTGCAAGCAATCACATCTTGTATGtaagctttaaaatatgttgtttgtcAGTGTTGTGGACATAGGACGGAACGGTGCACTGCTCTGGGTAAAGAAATTGTTTTTTCACTGTTTCAATCTGGTACACTCGGAACACTGTGTGCTTGCCATGCATTCTGTAAAAAAACGTGTATATTACAGATCtgctttatatttgattttcattttgtttttaatatgaatatatttggTTTTGTAAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109241 lncRNA downstream 18668 24359666 ~ 24363369 (-) False AMCG00021668
TU109205 lncRNA downstream 102650 24278637 ~ 24279387 (-) True G87495
TU109159 lncRNA downstream 180336 24199536 ~ 24201701 (-) False AMCG00021662
TU109120 lncRNA downstream 248726 24080736 ~ 24133311 (-) True G87428
TU109118 lncRNA downstream 304930 24076899 ~ 24077107 (-) True G87427
TU109295 lncRNA upstream 133634 24546082 ~ 24548123 (-) True G87573
TU109365 lncRNA upstream 574994 24987442 ~ 24989739 (-) True G87627
TU109358 lncRNA upstream 575953 24988401 ~ 24994242 (-) True G87622
TU109455 lncRNA upstream 999956 25412404 ~ 25415088 (-) False G87694
TU109456 lncRNA upstream 999956 25412404 ~ 25460562 (-) True G87694
AMCG00021667 mRNA downstream 12914 24366725 ~ 24369123 (-) True AMCG00021667
AMCG00021668 mRNA downstream 18578 24342900 ~ 24363459 (-) True AMCG00021668
AMCG00021666 mRNA downstream 74966 24279592 ~ 24307071 (-) True AMCG00021666
AMCG00021663 mRNA downstream 104441 24261901 ~ 24277596 (-) True AMCG00021663
AMCG00021661 mRNA downstream 125414 24237275 ~ 24256623 (-) True AMCG00021661
AMCG00021670 mRNA upstream 23759 24436207 ~ 24445238 (-) True AMCG00021670
AMCG00021673 mRNA upstream 140569 24553017 ~ 24568180 (-) True AMCG00021673
AMCG00021674 mRNA upstream 182449 24594897 ~ 24609459 (-) True AMCG00021674
AMCG00021675 mRNA upstream 354337 24766785 ~ 24802333 (-) True AMCG00021675
AMCG00021677 mRNA upstream 562820 24975268 ~ 24986960 (-) True AMCG00021677
TU108932 other downstream 1043553 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 1221060 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 3298467 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 3657157 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 3984254 20395612 ~ 20397783 (-) True G86649
TU109433 other upstream 991202 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 1492996 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 1678806 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 1739657 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 2499026 26911474 ~ 26919844 (-) False AMCG00021723

Expression Profile