RNA id: AMCG00021671



Basic Information


Item Value
RNA id AMCG00021671
length 498
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00021671
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24444307 ~ 24457362 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAGAAACGGCGGCGGCGGCTACAGCCATCGTACAAGGCCTGGATAACGTATTGTCAAAGCTGGATCACAGGCATTGGGTATGGCGATCGGACGTCTACATTCACCGGCACGCCCCTGTTCATGGCTCCTGAATTGCTGACCAGGGCTGTTGATTGGTGGGCACTGGGGGTGCTGCTGTTTGAAATGATGGTTGGCCAGACTCCTTTCAACAGCAGCAACCATGCGGAGCTGTACGACAGCATCATTCAGGACCCAGTGTCTTTCCCACGGTTCCTGTCAGCCGAAGCTGTGTCGGTCATCACAGGGGTTCAGTGTGGATTGGCTTGCACTGCTATGCCAAAACGTGAGCCTTCCTTCAACCCTGCAATAAAAGAGCGCCAGGCCCTGTGCACCTCagtctcccccaccccctctccgcCTCACGAGCGCAGGGTCCTCAGCGAAGAGGAGCAGGAACTCTTCAGGGACTTTGAATATGTTGTGGAGTGGTTCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU109237 lncRNA upstream 83398 24359504 ~ 24360909 (+) True G87525
TU109188 lncRNA upstream 182690 24260962 ~ 24261617 (+) True G87482
TU109160 lncRNA upstream 225483 24216374 ~ 24218824 (+) True G87464
TU109140 lncRNA upstream 245509 24195128 ~ 24198798 (+) False AMCG00021657
TU109112 lncRNA upstream 343093 24080736 ~ 24101214 (+) True G87423
TU109347 lncRNA downstream 477061 24934423 ~ 24935826 (+) False AMCG00021676
TU109409 lncRNA downstream 909613 25366975 ~ 25372339 (+) True AMCG00021682
TU109467 lncRNA downstream 1071962 25529324 ~ 25529585 (+) True G87704
TU109518 lncRNA downstream 1295691 25753053 ~ 25753253 (+) False AMCG00021692
TU109541 lncRNA downstream 1375092 25832454 ~ 25832988 (+) True G87765
AMCG00021664 mRNA upstream 66819 24371867 ~ 24377488 (+) True AMCG00021664
AMCG00021665 mRNA upstream 91054 24342852 ~ 24353253 (+) True AMCG00021665
AMCG00021659 mRNA upstream 167767 24274095 ~ 24276540 (+) True AMCG00021659
AMCG00021658 mRNA upstream 211550 24220921 ~ 24232757 (+) True AMCG00021658
AMCG00021657 mRNA upstream 245480 24183208 ~ 24198827 (+) True AMCG00021657
AMCG00021672 mRNA downstream 56756 24514118 ~ 24522275 (+) True AMCG00021672
AMCG00021676 mRNA downstream 452522 24909884 ~ 24949100 (+) True AMCG00021676
AMCG00021678 mRNA downstream 530115 24987477 ~ 25007730 (+) True AMCG00021678
AMCG00021682 mRNA downstream 821847 25279209 ~ 25371526 (+) False AMCG00021682
AMCG00021685 mRNA downstream 927434 25384796 ~ 25406102 (+) True AMCG00021685
TU109135 other upstream 266317 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 3208227 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 3212819 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 3212819 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 3279275 21158624 ~ 21165032 (+) False AMCG00021551
TU109403 other downstream 819414 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 1694706 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 4320953 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 4603525 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 4921213 29378575 ~ 29382273 (+) False AMCG00021779

Expression Profile