RNA id: AMCG00021672


Basic Information

Item Value
RNA id AMCG00021672
length 2739
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00021672
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24514118 ~ 24522275 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGTCAGGACTGTTCTTCTCTTTCCGCAGGATGGCTCAAggcagagaagagagaggaagaagactGTCTCCTTCAGCAGCATGCCAACGGAGAAGAAAATCAGCAGTGCCAGTGACTGTATCAATGCCATGGTGGAGGGTTCAGAGCTCAAAAAGGTTCGCTCCAATTCCAGAGTGTACCACAGGTATTTTCTGTTAGATGCAGACATGCAATCGCTGAGATGGGAACCTTCCAAAAAAGAATTGGAGAAAGCAAAGATTGACATTAAATCCATTAAGGAGGTGCGGACCGGAAAGAACACCGACATTTTCCGTGCCAATGGAGTTTACGATCAGATATCTGAGGACTGTGCATTCTCTGTCATATATGGGGAAAACTATGAATCCCTTGACCTGGTGGCCAACTCTGCAGATGTAGCCAATATTTGGGTCACGGGACTCCGATATTTGATATCTTATGGGAAACATACTCTGAACATGATTGAGAGCAGTCAAAACAACTTGCGGACCTTATGGCTGTCTGATCTTTTTGCAGAGGCTGATGTTAACAGTGTTAGGCAAATAGGCTTAGGTACAGCTGTTCAGCTCATCAAAAACTTAAATCCTGGActgaaaaatgtcaaaatagAGCTCAAGTTCAAAGAATTTCACAAAGCTAAAGATAAAATAGGGAGTGACGTCACAAAGGAGGAGTTCATTGAAGTCTTTCATGAGCTTTGCACCAGGCCAGAGATCTACTTTCTGTTGGTTCAGTTCTCAAGCAATAAGGAGTTTCTTGATACCAAGGACCTCATGATGTTTTTAGAAGCAGAGCAGGGGATGGCGCATGTTAGTGAGGACACCAGCCTTGAAGTTATCCAAAACTATGAGCCATCAAAGGAGGGCAGGCAAAAAGGATGGCTCTCCTTAGATGGCTTTACCAAGTACCTCATGTCTTCTGAATGCCATGTCTTTGACCCTGAACATAAAAAAGTGTGTCAGGACATGCATCAGCCCTTGTCCCACTATTACATAAATGCATCTCACAACACCTACTTGATAGAGGACCAGTTCCGCGGCCCCTCTGATATCACAGGTTACATCCGTGCTCTGAAAATGGGCTGCCGGAGCGTAGAGTTGGATGTCTGGGACGGCCCCGACAATGAGCCAGTCATATACACGGGACacacaatgacatcacagaTAGTCTTCCGTAGTGTCATTGACATTATCAACAAATATGCCTTTGCTGCATCTGACTTCCCTTTGATCCTTTGTTTGGAGAACCACTGTTCGCTTAAGCAGCAGAAGGTCATGTTTCAGCATCTGAAAAAGATTCTGGGGGATAAAATCCATGTGGATCCTCCCAATGTGGAAGAGAGCTATCTCCCATCACCTGAAGATCTGAAATGCAAGATTCTACTCAAAGCCAAGAAGCTTGCAGCCAACTGTACCAGCCCAGAAGGCGATGTGACTGATGAAGACGAGGGAGCGGAGATGTCTCAGAGAATGGGTAATGAAGCTGGGGAGCAGCAAATTGTGACACCTCAAAAACGGTTTCAGCTTTCCAAAGACCTTTCTGACATGGTGAGCCTGTGTAAATCGGTAGGGTTTAAGGAATTTCAGGTTTCTTTCCAGAACCAGAAATACTGGGAAATCTGCTCTTTCAATGAGGTCTTTGCATCTCGTAATGCCAGTGAGCAACCTGGGGATTTTGTCAATTACAATAAAAGATTCCTTGCCAGGGTTTATCCAAGTCCCATGAGGATAGATTCCAGCAACATGAACCCACAGGATTTCTGGAAGTGTGGATGCCAGATAGTGGCGATGAATTTCCAGACCCCGGGCTTGATGATGGACTTAAACATTGGTTGGTTCCGCCAAAACGGGAACTGTGGCTACGTGCTGCGTCCTGCCATCATGAGGGAAGAGGTGTCTTATTTCAGTGCCAACACTAAAGACTCTGTCCCGGGAGTGTCTCCTCAACTGCTCCACATTAAAATCATAAGCGGGCAGAATTTCCCCAAACCCAAAGGCTCGGGAGCCAAAGGTGATGTCGTGGACCCTTATGTCTATGTAGAGATTCACGGCATTCCAGCTGACTGTGCCGAACAAAGGACAAAAACCGTCAACCAGAACGGAGACAATCCCATTTTTGACGAGAGTTTTGAGTTTCAGGTCAACCTGCCTGAGTTGGCCATGGTGCGTTTCGTAGTGCTGGATGACGATTACATTGGGGACGAGTTCATTGGACAGTATACCATTCCATTCGAGTGCTTACAGCCCGGCTACCGGCACATCCCCCTGCAGTCCCTCACGGGGGAGGTGTTACCGCACGCCTGGCTCTTCGCACATGTGGCAATCACCAACCGCAGAGGTGGAGGGAAGCCCCACAAGCGGGGTCTCTCTGTGCGCAAAGGGAAGAAATCCAGGGAGTATGCCACCATGAGGATACTGGTGATTAAATCTTTGGATGAAGTCTTCAAGACTGCTGTCCAGCCATTGCGGGAAGCCACTGACCTCAGAGAAAACATGCAGAATGCAATTGTTCCATTCAAAGAACTGTGCGGTCTGTCTCCTGTGGCCAATCTCATGCAGTGTATCCTGGCCCTGTCCACACGCTTGATGAGTGGAGAAAATACCCCCTTTGTGATATTCAACCTTAAGGACCAGTATCCGACCATGGAGCCTCAAGCAACGATCCCCGAGATGCTGAAGAAAATTGTGACCGCTTATGATGCAGTAAGTACTGTCTGA

Function

GO: NA

KEGG:

id description
K15370 PLCL2; inactive phospholipase C-like protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109237 lncRNA upstream 153209 24359504 ~ 24360909 (+) True G87525
TU109188 lncRNA upstream 252501 24260962 ~ 24261617 (+) True G87482
TU109160 lncRNA upstream 295294 24216374 ~ 24218824 (+) True G87464
TU109140 lncRNA upstream 315320 24195128 ~ 24198798 (+) False AMCG00021657
TU109112 lncRNA upstream 412904 24080736 ~ 24101214 (+) True G87423
TU109347 lncRNA downstream 412148 24934423 ~ 24935826 (+) False AMCG00021676
TU109409 lncRNA downstream 844700 25366975 ~ 25372339 (+) True AMCG00021682
TU109467 lncRNA downstream 1007049 25529324 ~ 25529585 (+) True G87704
TU109518 lncRNA downstream 1230778 25753053 ~ 25753253 (+) False AMCG00021692
TU109541 lncRNA downstream 1310179 25832454 ~ 25832988 (+) True G87765
AMCG00021671 mRNA upstream 56756 24444307 ~ 24457362 (+) True AMCG00021671
AMCG00021664 mRNA upstream 136630 24371867 ~ 24377488 (+) True AMCG00021664
AMCG00021665 mRNA upstream 160865 24342852 ~ 24353253 (+) True AMCG00021665
AMCG00021659 mRNA upstream 237578 24274095 ~ 24276540 (+) True AMCG00021659
AMCG00021658 mRNA upstream 281361 24220921 ~ 24232757 (+) True AMCG00021658
AMCG00021676 mRNA downstream 387609 24909884 ~ 24949100 (+) True AMCG00021676
AMCG00021678 mRNA downstream 465202 24987477 ~ 25007730 (+) True AMCG00021678
AMCG00021682 mRNA downstream 756934 25279209 ~ 25371526 (+) False AMCG00021682
AMCG00021685 mRNA downstream 862521 25384796 ~ 25406102 (+) True AMCG00021685
AMCG00021684 mRNA downstream 890670 25412945 ~ 25415148 (+) True AMCG00021684
TU109135 other upstream 336128 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 3278038 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 3282630 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 3282630 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 3349086 21158624 ~ 21165032 (+) False AMCG00021551
TU109403 other downstream 754501 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 1629793 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 4256040 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 4538612 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 4856300 29378575 ~ 29382273 (+) False AMCG00021779

Expression Profile