RNA id: AMCG00021676


Basic Information

Item Value
RNA id AMCG00021676
length 3186
RNA type mRNA
GC content 0.46
exon number 16
gene id AMCG00021676
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24909884 ~ 24949100 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcGGTGGACAGTAACTTCATTCTTGCGAACGCTCAGGTGTCAAAGGGATTCCCAATCGTTTACTGCTCCGATGGATTCTGTGAACTGACTGGCTTTGTGCGGACGGAAGTCATGCAAAAGAGCTGCAGCTGTAAGTTTTTGTATGGCACAGAGACAAATGAGCCGATAATCCTTCGCATTGACAAGACCTTAGAGGAAAAGAAGGAATTCAAGGGGgaaatcatgttttataaaaagaaTGGTCATTTATTTTGGTGCCTATTGGACATAGTTcctataaaaaatgaaaaaggagatGTGGTCCTATTCTTGGCCTCTTTTAAGGACATCACAGACACAAAAGTTAAAATTGCTCATGACGATAAAAGGGAAGAGAAGCACAAAGGACGGGTGAAAACTGGGTCCCATTTCAGCTCAGCACGGATCCGCAGTCGAACTGTACTGTATCAGATCTCAGGACATCTGCATAGcagagaaaagaagaacaaaattaaaatcaataaaaaTGTATTTGGGGATCCACCAGCACTCCCAGAGTACAAAGTTGCCGATGCCAAGAAATCCAAATTTATCCTTTTACATTACAGCACCTTCAAAGCTGGCTGGGACTGGCTAATTTTACTTGCAACGTTTTATGTTGCTGTGACTGTACCttacaatgtgtgttttatcGGAGATGACGATCTTACACGAAGCACAACTGTCAGTGATATTGCAGTAGAAATTCTTTTTATAATAGatatcatttttaatttccgTACAACATATGTCAGCAAATCTGGGCAAGTCATTTTTGAAGCAAGATTAATTTGTATCCACTATGTCACAACGTGGTTCATCATTGATCTAATTGCTGCGCTCCCCTTTGACCTCCTCTATGCTTTTAATGTCAACGTGGTTTCGCTTGTCCATCTGCTGAAGACAGTCAGGCTCTTGCGACTTTTACGTCTTTTGCAGAAAATGGATCGCTAttcacaacacagtacagtggTCCTCACCCTTCTGATGTCCATGTTCGCCCTGCTGGCTCACTGGATGGCATGTATTTGGTATGTCATCGGCAAAAAGGAGATGGAATCCAACTCCTACACTTGGGACATCGGTTGGCTTCATGAACTGGGCAAGCGTCTGGAATCACCATACAACGGGAGCAGCAGCGCAGCCGGTCCCTCCATCCGAAGTGTCTATATCGCTTCCCTTTACTTCACCTTAAGCAGTCTCACCAGTGTGGGATTTGGGAACGTCTCTGCTAATACGGACGCAGAGAAGATTTTTTCAATATGTACTATGCTGATAGGAGCACTGATGCACGCATTAGTGTTTGGCAATGTGACAGCAATAATACAGCGCATGTACTCGAGGTGGTCACTGTATCACACCAGAACAAAAGACCTGAAGGATTTCATCCGGGTCCATCACCTACCACAGCAGCTAAAGCAGAGAATGCTGGAATATTTCCAGACAACCTGGTCCGTCAACAATGGGATCGATGCAAATGAGCTTTTAAAGGATTTTCCAGATGAACTGCGCTCAGACATCACTATGCACTTGAATAAGGAGATTCTACAGCTGTCTCTGTTTGAATCCGCCAGCCGAGGCTGTCTCAGGTCTCTGTCGCTGCACATCAAGACCTCTTTCTGCGCTCCTGGGGAGTATCTCCTGCGGCAGGGAGATGCCCTGCAGgccattttttttgtctgctcCGGCTCCATGGAGGTCCTCAAAGATGGCATGGTACTAGCGATTCTTGGAAAAGGAGACCTCATCGGAGCCAACCTTTCCCTGAATGACAGagtgataaaaacaaatgcagatgtgAAAGCGCTGACGTACTGTGACCTGCAGTGTATAAACCTCAAAGGACTATATGAGGTTCTGGACCTGTATCCTGAATATTCCCATAAGTTTGTGGAAGATATTCAGCAGGACCTAACTTACAACTTACGAGAAGGACATGAGGGTGACgggATAACAAGACtgtcaaacaaaacatcacTACCTcagtcaGAAGGTAAGGGCAATGGACGGATCAACCAGAGACACCTATCGATTGCAGAAGACCAGGAAGACAATGATGAGGAAGATGAAACCACACCACTGTCTCCAGCTTCTGTCAAAAACCGAGTTTCATACAAGTCAGAGAACCATCTGAAAGCATTCTCTTCAGCGAGATCCCCATACAAGTCCACACCGAGGCTCTGTTCCTCAAACCTGGATGCCAAGTCCAGATATGAAGCAGAGTCTTATAGGAACACGAGAGGACTGGAGAAGAACCTCAAAATCCACGTCTCCACTGTGAATAGCATCGGCCCTCCTGACCTCAGTCCAAGGATAGTTGATGGCACTGAAGATGATGCTGGCAACGAAAGCAATTCAACATTTGAGTTTCACCCGAACCAGCTGAAGGAGTCAAGAGCACAGCCCTTGGACAGAGATTTGCTCCAGGTTAGCTCAGGAGAGCTAGCAGCAAAGactgaagaaacaaaactacaaataaacAGGTTAAATCAGGAGgttAGCACACTGAGCAAGGAAGTAGCAGAGTTAAGCAAAGGCATGAGGAATTTTATGTTATTGGTGGAAGGTTTACTGTCTGCCCCCAAACCTCCGGTGTTTTGCCATAGTCACAACTCCTCAATGGAAAGTTTGCACTCTAAGATGACatggacaacacagcagtcATGTGTGCATTCTCAACCAGGGACGATCTCCTGCTCCTCAGTGCATTTTCAACAAGGCAACACAAGGCCCAGAGTCTTGGAGATGGACTCTTTGCAGAACTCTAGCAGTCTACAGAGGACTTGTCCAATTCTGGAGCACTTTGTCTCCCCAGCAGCGCCGTGTCCACCCTGCCACTTCCAAGTGACGCCCCAAGCCGATCATTTGCAATTCATAAGGTGCACTTCTCCGCAGACAGACTCGACCTTCACTACCCTTCAGTCTATTTCCGCCACCCTGTCTCCTTCTGTGTGTTCGTCCCCAGAAGCGGCATCCAAGGTGCTTCACAGCCAAGAGGACAATGTTGGCTCTCCTTATGCCGCAACAAGATCACACAGTCTGGAAAACTTGCCCCTTTCGTGGAACACTGAGGGAACGGTTCCTGTGTCTTTGCAAAGCCCAAGACGTTTGCCTCCAGAAATCATGATGGCTCCAGGAGATCTCACGGATGACACCGCCATCCATTTA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0018106 peptidyl-histidine phosphorylation biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0023014 signal transduction by protein phosphorylation biological_process
GO:0000160 phosphorelay signal transduction system biological_process
GO:0016021 integral component of membrane cellular_component
GO:0000155 phosphorelay sensor kinase activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04911 KCNH8, KV12.1; potassium voltage-gated channel Eag-related subfamily H member 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109237 lncRNA upstream 548975 24359504 ~ 24360909 (+) True G87525
TU109188 lncRNA upstream 648267 24260962 ~ 24261617 (+) True G87482
TU109160 lncRNA upstream 691060 24216374 ~ 24218824 (+) True G87464
TU109140 lncRNA upstream 711086 24195128 ~ 24198798 (+) False AMCG00021657
TU109112 lncRNA upstream 808670 24080736 ~ 24101214 (+) True G87423
TU109409 lncRNA downstream 417875 25366975 ~ 25372339 (+) True AMCG00021682
TU109467 lncRNA downstream 580224 25529324 ~ 25529585 (+) True G87704
TU109518 lncRNA downstream 803953 25753053 ~ 25753253 (+) False AMCG00021692
TU109541 lncRNA downstream 883354 25832454 ~ 25832988 (+) True G87765
TU109559 lncRNA downstream 909849 25858949 ~ 25870195 (+) True AMCG00021693
AMCG00021672 mRNA upstream 387609 24514118 ~ 24522275 (+) True AMCG00021672
AMCG00021671 mRNA upstream 452522 24444307 ~ 24457362 (+) True AMCG00021671
AMCG00021664 mRNA upstream 532396 24371867 ~ 24377488 (+) True AMCG00021664
AMCG00021665 mRNA upstream 556631 24342852 ~ 24353253 (+) True AMCG00021665
AMCG00021659 mRNA upstream 633344 24274095 ~ 24276540 (+) True AMCG00021659
AMCG00021678 mRNA downstream 38377 24987477 ~ 25007730 (+) True AMCG00021678
AMCG00021682 mRNA downstream 330109 25279209 ~ 25371526 (+) False AMCG00021682
AMCG00021685 mRNA downstream 435696 25384796 ~ 25406102 (+) True AMCG00021685
AMCG00021684 mRNA downstream 463845 25412945 ~ 25415148 (+) True AMCG00021684
AMCG00021683 mRNA downstream 469720 25418820 ~ 25432607 (+) True AMCG00021683
TU109135 other upstream 731894 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 3673804 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 3678396 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 3678396 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 3744852 21158624 ~ 21165032 (+) False AMCG00021551
TU109403 other downstream 327676 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 1202968 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 3829215 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 4111787 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 4429475 29378575 ~ 29382273 (+) False AMCG00021779

Expression Profile