RNA id: TU109347


Basic Information

Item Value
RNA id TU109347
length 212
lncRNA type sense_over
GC content 0.55
exon number 2
gene id AMCG00021676
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24909884 ~ 24949100 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTGAATCCGCCAGCCGAGGCTGTCTCAGGTCTCTGTCGCTGCACATCAAGACCTCTTTCTGCGCTCCTGGGGAGTATCTCCTGCGGCAGGGAGATGCCCTGCAGgccattttttttgtctgctcCGGCTCCATGGAGGTCCTCAAAGATGGCATGGTACTAGCGATTCTTGGAAAAGGAGACCTCATCGGAGCCAACCTTTCCCTGAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109237 lncRNA upstream 573514 24359504 ~ 24360909 (+) True G87525
TU109188 lncRNA upstream 672806 24260962 ~ 24261617 (+) True G87482
TU109160 lncRNA upstream 715599 24216374 ~ 24218824 (+) True G87464
TU109140 lncRNA upstream 735625 24195128 ~ 24198798 (+) False AMCG00021657
TU109111 lncRNA upstream 794915 24080736 ~ 24139508 (+) False G87423
TU109409 lncRNA downstream 431149 25366975 ~ 25372339 (+) True AMCG00021682
TU109467 lncRNA downstream 593498 25529324 ~ 25529585 (+) True G87704
TU109518 lncRNA downstream 817227 25753053 ~ 25753253 (+) False AMCG00021692
TU109541 lncRNA downstream 896628 25832454 ~ 25832988 (+) True G87765
TU109559 lncRNA downstream 923123 25858949 ~ 25870195 (+) True AMCG00021693
AMCG00021672 mRNA upstream 412148 24514118 ~ 24522275 (+) True AMCG00021672
AMCG00021671 mRNA upstream 477061 24444307 ~ 24457362 (+) True AMCG00021671
AMCG00021664 mRNA upstream 556935 24371867 ~ 24377488 (+) True AMCG00021664
AMCG00021665 mRNA upstream 581170 24342852 ~ 24353253 (+) True AMCG00021665
AMCG00021659 mRNA upstream 657883 24274095 ~ 24276540 (+) True AMCG00021659
AMCG00021678 mRNA downstream 51651 24987477 ~ 25007730 (+) True AMCG00021678
AMCG00021682 mRNA downstream 343383 25279209 ~ 25371526 (+) False AMCG00021682
AMCG00021685 mRNA downstream 448970 25384796 ~ 25406102 (+) True AMCG00021685
AMCG00021684 mRNA downstream 477119 25412945 ~ 25415148 (+) True AMCG00021684
AMCG00021683 mRNA downstream 482994 25418820 ~ 25432607 (+) True AMCG00021683
TU109135 other upstream 756433 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 3698343 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 3702935 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 3702935 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 3769391 21158624 ~ 21165032 (+) False AMCG00021551
TU109403 other downstream 340950 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 1216242 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 3842489 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 4125061 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 4442749 29378575 ~ 29382273 (+) False AMCG00021779

Expression Profile