RNA id: AMCG00021678



Basic Information


Item Value
RNA id AMCG00021678
length 4114
RNA type mRNA
GC content 0.44
exon number 23
gene id AMCG00021678
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24987477 ~ 25007730 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGGAAGTGTTCGTGTCTGTGTTTTGGTTCTAAAGGGGGAAGTTgcgagaaaaaaagaaaggaggagACGTGATCGGGTCTGGGCAAAATATACGTATTTGTACAGCAATAGGAAAGTTCATATTCGAAGAATTCCTGCCAAGACCCCCGTATTGGAAAGCCGTGTACATACATTTTCGCCTGGCCATCAGTTTTTAACTGAGAAAAGAAGGAAGACTGTGCTTATAAGTTCAGAGCAGGAGACTGGTCATGGCAAGTCGGGGAGGAGCAACAAGACCCAATGGACCAAATGCTGGCAATAAAATTTGCCAGTTTAAGCTTGTGCTTCTTGGCGAGTCTGCTGTTGGAAAGTCCAGTTTAGTGCTTCGTTTTGTGAAAGGGCAGTTTCATGAGTTTCAAGAGAGCACAATAGGAGCTGCTTTTCTGACGCAAACTGTGTGTCTGGATGACACAACAGTGAAGTTTGAAATATGGGACACTGCTGGACAAGAGCGTTACCACAGTTTAGCACCAATGTACTACAGAGGCGCTCAGGCTGCTATAGTTGTATATGACATTACAAATGAAgagTCGTTTGCACGAGCAAAAAACTGGGTAAAAGAACTTCAAAGACAAGCAAGTCCTAATATTGTAATAGCTTTGGCAGGCAACAAGGCCGATCTGGCTAACAAGAGAGCAGTTGACTTCCAgGATGCACAGTCATATGCAGACGACAACAGTTTGCTGTTCATGGAGACATCAGCGAAGACCTCGGTGAATGTGAATGAAATATTCATGGCAATAgAGACGCACCGAGCGACCGGGGAGTCCGTTTCGGGCTCGGTGTTTAGGATGTCCGAGAGCGGCGGCCTGCAGCAGGGCTCCCCGGCCGTGGGGGCAGCGGGCTCGGCTCCTGCTGCTCCCGGGGGAGGAGGGGCCGAGTGCTCGGGCGCTGCTGCGGGATCTGCTGGTATCGCCGCAAAGAAGGCGCAGCTCCGCTCCGCTCCTCGGCCGAAGAAACTGGAGAAACTCGGGGTGTATTCCTCCTGCAAGGCTGAGGAGTCCTGTAAGTGTAATGGGTGGAAGAGCCAGAATCCTCCTCCCACGCCTCCCAGGGTGGACCTGCAGCAGACAGCCGTCAGCCTCACTGAACCGTGCCGCAGCTGCAGCCACTTATTGGccGATCATGTTTCCCACTTAGAAAATATCTCAGAAGAGGAAATGAACAGGCTGCTGGGAGTTGCATTAGATGTGGAGTATCTCTTTACCTGTGTGCATAAGGAGGAAGACGCAGATACTAAGCAAGTGTACTTCTCCCTGTTCAAGcttttgagaaaatgtattttgcagatGGGCAAACCTGTCGTGGAAGGAGCTTTAGAGAGTCCTCCGTTTGAAAAACCAAGCATCGAACAGGcaagtaaaaatGGGGTGAATAACTTTGTTCAGTACAAATTCAGCCACCTTCCTTCGAAAGAGAGGCAGACAATTGTCGAGCTGGCCAAGATGTTCCTCAATCAGATCAACTACTGGCAGCTGGAGACTCCCTCTCAAAGGAGACAGTGCTCACCCATCGATGATGCTGCAGGATACAAAGTGAATTACACAAGGTGGCTGTGCTACTGCAATGTCCCTCAGTTCTGTGACAGCCTGCCCCGCTATGAGACCACACAGATATTCGGGAGGACGCTTCTCCGCTCTGTCTTCACTGTCATGCGACGGCAGCTGCTGGAACAGGCCCGGCAGGAAAAAGATAAACTCCCTCCCGAGAAAAGAACGCTCATCCTCACACACTTCCCAAAATTCCTGTCAATGCTAGAGGAGGAAGTTTATAGCCACAATTCACCGATCTGGAATGAAGATTTCTTGGCATCATCATCCACAAGTGTCCAGTTAGGGCTTCAGACTGTGATCAGTGCTCCTCCTGTGGCCAGGTCCTTTTCTTACAGTGCGAGCCCTGCAGCGCTTGATTCCTCAAACTGTGGGACCCTCAGCCCTGCCTGTAAAACTGCGTCTGCCATTGAGGCAAACCTAGGAGAAAAACGCAAGTCAACAGAACCCTTTACTCACGAAGAAACGAAGAGGCCAAGGGTTGTGGGAGATATTCCTATGGAATTAATAAATGAAGTTATGTCCACAATCACAGATCCATCTTCTATGTTGGGGCCAGAGACCAGTTTTCTCTCCGCGCATTCGGCAAGAGACGAGGCTGCCAGGCTGGAAGAGAGGCGTGGCGTGATTGAATTTCACGTAATTGGGAATTCCTTAAACCAGAAGCCAAATAAGAAGATCATGATATGGCTTGTTGGcctgcaaaatgtgttttcccaTCAGCTTCCCAGAATGCCTAAAGAGTACATTACACGACTAGTCTTTGACCCGAAACATAAAACCCTGGCACTGATCAAAGACGGCCGTGTGATCGGAGGGATCTGTTTCAGGATGTTTCCATCTCAAGGCTTCACTGAGATTGTGTTCTGTGCCGTCACCTCAAACGAACAAGTAAAAGGATATGGAACCCATCTGATGAATCATCTCAAGGAGTATCACATTAAGCATAATATTCTGAACTTTCTAACATATGCAGATGAATATGCCATTGGATACTTCAAAAAGCAAggATTCTCAAAAGACATAAAAGTTCCAAAAGCAAAATATGTGGGCTATATAAAAGACTATGAAGGTGCCACTCTGATGGGATGTGAACTGAATCCCAGGATCCCATACACTGAGTTCTCTGTCATCATAAAGAAGCAGAAAGAGATCATTAAAAAGCTGATCGAAAGGAAGCAAGCGCAGATCCGAAAGGTTTATCCTGGACTTTCCTGTTTTAAGGAAGGTGTTCGGCAGATCCCTATCGAAAGCATTCCTGGAATAAGGGAAACTGGATGGAAACCTGCTGGAAAAGGGAAGGAGCCAAAGGACCCTGATCAACTTTACAGCACCTTAAAAAATATCCTGCAACATGTAAAGACTCACCAGAATGCTTGGCCATTCATGGAACCAGTGAAAAAGACAGAAGCTCCAGGATACTATCAAGTGATCCGCTTCCCGATGGATCTAAAGACAATGACTGAACGTCTTAAAAACCGGTATTACACAACAAAGAAGCTGTTTATGGCAGACATGCAAAGGATCTTCACGAACTGCAGGGAATACAACCCTCCAGAGAGCGAATACTACAAATGTGCGAACTTACTCGAGAAGTTCttctacacaaaaataaaagaagcagGTTTAATTGAAAAGTGAAAGGCTTGCAGATCTCAGACCCCAGGTACATTTTACAAGTTACTCTGTTTACTCAGGTCAATATCActcaagaagaaaaatgtatagagTAACAGAATTCATAAAGACAGCAAATGGAGTCAGATCAATAATGGGATTTTCAAGTGTAAAAACATCCTCTGGAATCCTATGTCTGCATTATTCAGTAAGATACTCAACAGGTCCAGGAACACAAGCTGACATTGTTACTACGTGTGCATGACTTCTGCAATGTCTGTGTACATTTTCCCCATCAACGTATGTACTGGTCAGGGTCTTATGTTCTAATCATCCATCCTGCCAGAAATTCTTGTGAAGGGTTTTGTGTGGAGGGAGTCATCTCAGAAactacagcttttttttttcttcctcaaatTTTTACCCTCCATTCtgtttttcataaaaatgtgttCCACATTGTGAAAAAGTCCCACATTGTTTGGGCTTGAGGAAGAACTGaaacttattttaaagcaaatatgcaaaaaaaaaaaaaaaatacaaaaacaaaacaagagcatTTTCTGGATGTCgttttgtgttttaacaagAAAAACTAATGCACGCTTActgcttaatttaagtatctAGAAAATAATTCTTATTTATGTGATGTTATTTCAAGGGTTGTTAGTATAACTGAAGAAAAGGTCTTAATTTATTATGTCTGTCTTACGCTCTGCCCTGCAGAATAttgatacaaatgtattttgataaaGATTGTGCAATAATGAGtagctttgttgttttgtaagatgtttgtatttttaaatatttagaaagaaaatctGGATTTTGTAATATGTGGAACATATTTTAAGACCTTTctacttttgcttttaaaaagtttGCATATTTTATAGAAT

Function


GO: NA

KEGG:

id description
K06062 PCAF, KAT2, GCN5; histone acetyltransferase

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU109347 lncRNA upstream 51651 24934423 ~ 24935826 (+) False AMCG00021676
TU109237 lncRNA upstream 626568 24359504 ~ 24360909 (+) True G87525
TU109188 lncRNA upstream 725860 24260962 ~ 24261617 (+) True G87482
TU109160 lncRNA upstream 768653 24216374 ~ 24218824 (+) True G87464
TU109140 lncRNA upstream 788679 24195128 ~ 24198798 (+) False AMCG00021657
TU109409 lncRNA downstream 359245 25366975 ~ 25372339 (+) True AMCG00021682
TU109467 lncRNA downstream 521594 25529324 ~ 25529585 (+) True G87704
TU109518 lncRNA downstream 745323 25753053 ~ 25753253 (+) False AMCG00021692
TU109541 lncRNA downstream 824724 25832454 ~ 25832988 (+) True G87765
TU109559 lncRNA downstream 851219 25858949 ~ 25870195 (+) True AMCG00021693
AMCG00021676 mRNA upstream 38377 24909884 ~ 24949100 (+) True AMCG00021676
AMCG00021672 mRNA upstream 465202 24514118 ~ 24522275 (+) True AMCG00021672
AMCG00021671 mRNA upstream 530115 24444307 ~ 24457362 (+) True AMCG00021671
AMCG00021664 mRNA upstream 609989 24371867 ~ 24377488 (+) True AMCG00021664
AMCG00021665 mRNA upstream 634224 24342852 ~ 24353253 (+) True AMCG00021665
AMCG00021682 mRNA downstream 271479 25279209 ~ 25371526 (+) False AMCG00021682
AMCG00021685 mRNA downstream 377066 25384796 ~ 25406102 (+) True AMCG00021685
AMCG00021684 mRNA downstream 405215 25412945 ~ 25415148 (+) True AMCG00021684
AMCG00021683 mRNA downstream 411090 25418820 ~ 25432607 (+) True AMCG00021683
AMCG00021688 mRNA downstream 584807 25592537 ~ 25615265 (+) True AMCG00021688
TU109135 other upstream 809487 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 3751397 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 3755989 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 3755989 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 3822445 21158624 ~ 21165032 (+) False AMCG00021551
TU109403 other downstream 269046 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 1144338 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 3770585 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 4053157 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 4370845 29378575 ~ 29382273 (+) False AMCG00021779

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000321_01741333_01755566.mRNA True 3151 mRNA 0.47 17 CI01000321 1741221 ~ 1756358 (+)