RNA id: AMCG00021682



Basic Information


Item Value
RNA id AMCG00021682
length 531
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00021682
representative False

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25276776 ~ 25372339 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCCAGTGAAGTGCAAAGACCTGACGACAGTCCCAGTACGAGTGGAGGGAGCTCGGATATAGATCAGCGGGAGAGTGTTCAAcaagaacaagagagagaacaaacaCAGCCCAAAAAGAAAGAGACTAAAATCTCCAGCAAAACGGCTGCAAAGCTCTCAACAAGTGCTAAAAGCATTGTTGTGCTGAGAGCATCTGTGGTCCATGGTGCTCCCTCAGTTTATTATCTGAGCCAAACGCCGGGTGGGATCTGCAGCTGCAAGGCTCGGCTGgtAGTTAACAACAAAGGCTGGGATAATGTCTCCTACTGTGACCTGACCGAACCCAACCTTTACTGCGTCCACTCTTCAGGGCGGaaaagccgGCTGGCCATGCTCCCACAACTGGGCCTCTTTCAGTCTATAAAcacagaaagagaaaaagacgGACGCGCTGATCCCCTGGTCGGAAGCATCGCTACACAGTATCTGACCAACAGAGCTGAGCATGACAGAATAGCCAAACAGTGGACCAAGAGATATGCCACATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU109347 lncRNA upstream 343383 24934423 ~ 24935826 (+) False AMCG00021676
TU109237 lncRNA upstream 918300 24359504 ~ 24360909 (+) True G87525
TU109188 lncRNA upstream 1017592 24260962 ~ 24261617 (+) True G87482
TU109160 lncRNA upstream 1060385 24216374 ~ 24218824 (+) True G87464
TU109140 lncRNA upstream 1080411 24195128 ~ 24198798 (+) False AMCG00021657
TU109467 lncRNA downstream 157798 25529324 ~ 25529585 (+) True G87704
TU109518 lncRNA downstream 381527 25753053 ~ 25753253 (+) False AMCG00021692
TU109541 lncRNA downstream 460928 25832454 ~ 25832988 (+) True G87765
TU109559 lncRNA downstream 487423 25858949 ~ 25870195 (+) True AMCG00021693
TU109567 lncRNA downstream 513920 25885446 ~ 25885703 (+) True G87786
AMCG00021678 mRNA upstream 271479 24987477 ~ 25007730 (+) True AMCG00021678
AMCG00021676 mRNA upstream 330109 24909884 ~ 24949100 (+) True AMCG00021676
AMCG00021672 mRNA upstream 756934 24514118 ~ 24522275 (+) True AMCG00021672
AMCG00021671 mRNA upstream 821847 24444307 ~ 24457362 (+) True AMCG00021671
AMCG00021664 mRNA upstream 901721 24371867 ~ 24377488 (+) True AMCG00021664
AMCG00021685 mRNA downstream 13270 25384796 ~ 25406102 (+) True AMCG00021685
AMCG00021684 mRNA downstream 41419 25412945 ~ 25415148 (+) True AMCG00021684
AMCG00021683 mRNA downstream 47294 25418820 ~ 25432607 (+) True AMCG00021683
AMCG00021688 mRNA downstream 221011 25592537 ~ 25615265 (+) True AMCG00021688
AMCG00021687 mRNA downstream 260660 25632186 ~ 25678181 (+) True AMCG00021687
TU109135 other upstream 1101219 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 4043129 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 4047721 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 4047721 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 4114177 21158624 ~ 21165032 (+) False AMCG00021551
TU109668 other downstream 780542 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 3406789 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 3689361 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 4007049 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 4007049 29378575 ~ 29382273 (+) False AMCG00021779

Expression Profile