RNA id: AMCG00021686


Basic Information

Item Value
RNA id AMCG00021686
length 2859
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00021686
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25406702 ~ 25411562 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCAGTCAGTGGGTGTTTGTCTTTCTGTAGGAGCTGCACTGGACTATAACCTGGTGTCGTTATACGATCTGTACAGTCTTTCTGTTTCTTGAATGTTGCATTCAGTTTTATTGATCTATATATTACAAAACCCGAAGCAGGTTCGTTTATTCCTCGCATCATGGTTTTGTGATATTAACTTATTGTAGCCGAATTGCTTTCCGTTACGAGCCGCTGCGCCGGGCCGTGTGTCTGTGCGGGCTGTGAGCAGTGCAAGGTCGGGCGCACGGCATGGGCAAGGGCTGCAAAGTGGTGGTGTGCGGGCTGGCATCCGTGGGCAAGACTGCCATCCTGGAACAGCTGCTGTATGGGAATCATATTGTGGGGTCCGAGTCCAATGAAACCCTGGAGGACGTGTACGTGGCCTCGGTGGAGACGGACCGTGGAGTGAAGGAGCAGTTGCGCCTCTACGACACCAGGGGACTCCAGGACGGACTCGAGCTGCCCAAGCACTACTTCTCATTTGCAGACGGGTTCGTGCTGGTCTACAGCGTGGACAGCCTGGAGTCCTTCAAGAAGATCGAGGTCCTCAAGAAGGAGATCGACAAGTCCCGCGACAAGAAGGAGGTGGTGGTGATCGTCCTGGGGAACAAGACGGACCTCCACCGCAGGCAGGTGGACCTGGAGACGGCGCAGCAGTGGGCCCGCGTGGAGAAGGTGAAGCTGTGGGAGGTGAGCGTGACCGAGCGCACCACCCTCATCGAGCCCTTCACCGTGCTGACCAGCCGGCTCACCCAGCCCCAGAGCAAGTCCTCCTTCCCCCTGCCGGGCCGGAAGAGCAAGGGCACCCCCTCCAACGACATGTGAGCGGAGCCCCCGGGCCGGAGCGCTGGCTTCGAGCGCCGTGCCTGCAGGGCGTAGCGGGAACTGCATTGAACCGCAGCAATAAAGGGAACTGGAGGGAGACCGCGCTGTGAACGTGGGAGCACTGGTGAGCGAGCGACAGCACCTGGACGTTGCTGCAGCTCGTGTGATGAGCAGCTTTGAGTCAAAAGAAAAGATGCTTTTCAATCGCTCAGCAGGACAATTTCAGAAAATAGTTTGCTAAAATATGTAAACGCCTACTAAAAGTTCTTCCATAATCTAATTTCAGTAACTAATTTCAAAACTGTAGCGTTTCTCaagaattttatttttcaattatatcaGTTATAGAATACTGAAAACTGTCTTCATGCAATGcttagttaaaaacaaacaaatgcatataattGTCCATAAGATGTAGCAGAAACATTTTTGGCCTCGTCTTTGTGGATTTGTGCTAAAAACgtaatatttaattactttaaacattAATGTAAATTCTACACCTTCACAATGCTTAGATTTGAATTCTGCCTTTTCAAGAGTCATGCTCTGCAGAACCCAGTGAGAATCACTAACTCTGAGAAATGTAGcgtttttaacatttcagtgtttgttttgtgatgtgAGAACTGATCTTGCAGACTATATCCTCAGCAAAAGTAAAGATAGAAAAGCTGCAAGCAGTGCTTACAGGGGACACTTGGTTGTAATGGCACAATATAGCTGCAGGGCTCCAGAGTACACTGGGTATCAGGTTAATCACACAGCCCATTATCATTGTCCATTTTGAATGTCAATTTATATACAATCCAATGTGATTGATATTTTACTGTGAATGAGGAAGGTATTCACACAATATCCTGTTGCGCTACAGTCAAGATGCATATTAttggttttctgtgtttgttcttaATTTCATACACAACCACAGCACATTATATACAGTTAAACTACAACCAACTGTAGGTGGTTCTATGCAATggataattttagttttttttctaattatttaagACAACTTTTAAGTATAATACTTGAATGTTTcttgattgtttgattttttcCATTGCAGTTTGTAAGGTGTCagcattttacagatttatCATTTTAACCACTACGACAGATTACCTGTGTCTAAGGATCAGGGAGCAATAAATTagtgtaaatacatttcattaaagtattcacatccttcaaTTGAAACCATTATTCAGTCATTCGTTGTATGGAATTTTGTTCATAAAACTTCACGTATGTATCGTTCCAGGCCGTTGAACGCCAACTCGAAAGATTTCAGTGTATTGACAGGGTTAAGATGGGGCAGGTCAGCTTTTGACTACCGCTCAAttgatttccattttctttcccGACGATTAATGACCGCAGTCTCATATTCCAGGAAGTGCTCATTTATCCTTGCTATGTGTGGATAGACAGCCGTACTTTCATTTGTAAATCTGGGTCAGTGACTCCTACACTGCTTTCAAAGAGCACATTGCATTAGGTTTGGATATTTATACCTCACACTAGTTCATTGTGCCTTCTATGCCTCTTCTGCTAAAAACGAATTCTGATTAGATCCGTAGGTACTTTTGACTGGTCTTCCACACATTGATGCTGAAAACCTCCAAGGTCACAGAAGTAGTAGAATAAAAGATCAACACACTACACAGAACAGCATTATGCACTTTTATGTACGTTAAGTAATACTTTTTCAATATATGCACCAGTAGTTTCCTCTGGCAGTACGTGTTGTCTTGTTGAAGTATTTTTGTGCTTTGAGTCCTTTGTCAAACTTGCTCCGATTTTTCCCATGTCAAAAGCAGTGTATAGAGCACTTTATGCAATATGGACACTAAGGTAGTTTCACTTTatcaaatctaaattaaaaatgtcagattGTCCTATCCTGTATTGTGTcagtaataaaaatatgtactgaaatgttgcttttgtccattacctttgttttataacaATATGAAAATAGTGTTTAATAATTAATCCACA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K17197 NKIRAS; NF-kappa-B inhibitor-interacting Ras-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109358 lncRNA downstream 412460 24988401 ~ 24994242 (-) True G87622
TU109365 lncRNA downstream 416963 24987442 ~ 24989739 (-) True G87627
TU109295 lncRNA downstream 858579 24546082 ~ 24548123 (-) True G87573
TU109241 lncRNA downstream 1043333 24359666 ~ 24363369 (-) False AMCG00021668
TU109205 lncRNA downstream 1127315 24278637 ~ 24279387 (-) True G87495
TU109455 lncRNA upstream 842 25412404 ~ 25415088 (-) False G87694
TU109456 lncRNA upstream 842 25412404 ~ 25460562 (-) True G87694
TU109470 lncRNA upstream 119911 25531473 ~ 25531759 (-) True G87707
TU109480 lncRNA upstream 245820 25657382 ~ 25657793 (-) True G87717
TU109482 lncRNA upstream 265421 25676983 ~ 25677417 (-) True G87719
AMCG00021681 mRNA downstream 202801 25202404 ~ 25203901 (-) True AMCG00021681
AMCG00021680 mRNA downstream 321620 25074347 ~ 25085082 (-) True AMCG00021680
AMCG00021679 mRNA downstream 393942 25007690 ~ 25012760 (-) True AMCG00021679
AMCG00021677 mRNA downstream 419742 24975268 ~ 24986960 (-) True AMCG00021677
AMCG00021675 mRNA downstream 604369 24766785 ~ 24802333 (-) True AMCG00021675
AMCG00021691 mRNA upstream 271208 25682770 ~ 25704828 (-) True AMCG00021691
AMCG00021690 mRNA upstream 294014 25705576 ~ 25713766 (-) True AMCG00021690
AMCG00021696 mRNA upstream 307795 25719357 ~ 25799664 (-) True AMCG00021696
AMCG00021695 mRNA upstream 462329 25873891 ~ 25884232 (-) True AMCG00021695
AMCG00021699 mRNA upstream 551352 25962914 ~ 25976336 (-) True AMCG00021699
TU109433 other downstream 164 25403650 ~ 25406538 (-) True G87674
TU108932 other downstream 2068218 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 2245725 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 4323132 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 4681822 20721884 ~ 20724880 (-) True AMCG00021534
TU109596 other upstream 493882 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 679692 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 740543 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 1499912 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 3370240 28781802 ~ 28783281 (-) True G88242

Expression Profile