RNA id: AMCG00021690


Basic Information

Item Value
RNA id AMCG00021690
length 3472
RNA type mRNA
GC content 0.44
exon number 11
gene id AMCG00021690
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25705576 ~ 25713766 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGTGTAAAGCAGGGACACTATTTTGCTGAGGGTCCCGTGTGACAGAGGTCTGAGGGGAACATGGCTGTTTCACAGGGAGTCAGTGCGTTATGCGAAAATCCCAATGACGTCTTTTTAGATGCATCCAAATTATTGTTGACATACGCGGACAATATACTCAGAAATCCCAATGAGGACAAATACAGATCGATTCGCATTGGCAATCCCACGTTTTCTACCAGACTGCTGCCCATCAAGGGGGCCGTGGAGTGCCTGTTCGAGATGGGCTTTCAGGAGGCGGAAACGCACCTGGTATTTCCAAAGACTGCCTCTGTGGAACAGCTGCGTTGCATCCGAGAGTCCATTGCTGCGGAGAGGGACCAAAGGCTGAGCGGAGGGCCCTCGGTCTCACCCCAGACCCCGAGCCCCAACAGTATTCTCAGCCAGCCAGCCACGGCTCCTATCCCCAGCCTCCCCGTGGCCTCGCACACACCGGCAGCTCCACAGACCCTACCTCCTGCATCGCAGCCTGCGCCTGTGGAATCCAGCATGGCCTTTTTTAGGACCCTTCAATCAAACTTCCAGCATGTGATGGTTTATGAAAACCCTGCTCTTCAGCAGAAGGCTCTCTCTTGCATACCTGTTCTCCAGCTCCAAACAGCAGCCCAGGAAAAACTGCAACAAGCTAAAGAGGCAGATCCAGGGTGTAAAATGAATGCTGAAGACCTGTTGTTGCTCGAGTTGTTGCGCTGGTTCAAGGGAGAGTTCTTTTCCTGGGTCAACTGCCTGCCCTGCAGTCGCTGTGGTGGGCAGACCCAGTCCTCGGGCGGGCTGTCTCCTTCCACAGAGGACCTGCGGTGGGGTGCCAGTCGCGTGGAGAATCACTTCTGCGGACAGTGCCAGCTCATAAACAGATTCCCAAGGTTTAATAACCCAGAGAAGCTGCTGGAGACACGTCGTGGGCGCTGTGGGGAGTGGGCCAACTGCTTCACCCTGTGCTGCAGAGCGCTGGGATTGGAGGCACGATACATATGGGACAGCACAGGTAAGCATCACTGCTTATGTGGCCCGCTCTTTCCATGCTGTGAATACCCTGTGGTTGATATAACTTGGAGGTATTCTTGTAAGCATGAAGATGTTCTTCACAGACGGACACAAGTCCAGGAGGGATGGCTGCGACAGACAATCAATGGACTGAGCTCTGTGAGACAGCAATCTCTTACCccagagagaaggaaagagctACTGGAAAGATTACTGGTGGAGCTTGTGGAGTTTATTTCCCCAAAAACCCCTAAACCAGGGGATCTAGGAGGTCGCACCTCTGGCTCTTTGGCCTGGCGTGTGGCACGGGGAGAAACTGGCAGCCAAACATCTaaaCCTGGGCTTGTTTTCACTCCTTCTGAAAATGAGAAGCTCCAGAAGCGGTTCCACCTTCAATATAATGTTACAAAAGATCAATACTGTCGGGTTTCTAACAACGAGGAGGAAATTAAAGGTTGGGAGAAGGGTGCCTGGAAGAAGGAATCTGTTTTTAGGAAAGTTGAGAATGACTGGCAAATGGTTTATATCGCTTGTATAGAGGGGTCATCTTCAGGTAGAATCACCTGGAAGTTCGACTGTAGTCTGGCaggactgaaaatgaaaactgtttcGGTAAAAGCCAGCAGTGAGACTTTTCATTCTGGCAAAGTGACTTGGAGGATACACTCAAATGAAGAGACAACAGAGTTTTTAGGAGACAATACACTGCATTCATTCCAGAATGTATCCGGCGCTACTGACCTTGTTTTGGAAGCCATTTTAAGTGGTGGAGAAGGTGATACGTCATGGCAGCATGCACAGCTTTTCAGACAAAGTCTCAAAGAAGTTGAAGAATCCTCACTAGAGATTATTATTACCATGGTCGATGCTTGATACCTTATCTGcatgtgaattatttttttttcctctattaTATAACACTATTTTGTACCTCAGCAACTTGTTTTGCGACTAAAGAGAATCAGTGGAGTTCTTCTTATAGCTAGTGTGATGTTTTGAGAAAATAGAACTAACTTTGGTGCTACATTTTAATGGCCACaagtttacaatatttttatccCTATAATGGTTACGGTTTGGTTTTATCTGACTAAAAATTgactttctttccatttttgatgcattttatgtGCGTTTTAACTTGTGattgaataaatgaaaaacgTGAATTATGTCAAGGTTGTTATACAGAAAGTGATGCATTACTTTTAATGGTTGATTAGCTCTTGCTCTGGTGATATATTGGTTGTGGCTATGGAGAGGTGAAGTGTTCCTAATTTTCTTCTTAAATTTGGGGATTTCATGGCCCTCATGCCTGAATGGTTAAAACTGAAAAGCACAAATGGAGAAATCTAgagaaattgtattaaatagaAATGCAGATAAGACTTCTAGACATTACGATATGGAAATAgagcaatatttaattttccctTTTAATACTGTTGGACatgagcaaaaataaaaagccaagaAGCCAAATTCATGCATTAGTTATGCAaatgtaatggggctcattgtGTATAAGTTTGTTAAGGTGATGTAATCCCTCTCTGAATGAAGTCAAGTGTTCAAATCCCCTACATCAGGGAACCGGTCTTAGCCGGTGTAGCAGGTTTGTCTCTCTGCTGCGCACCCGGGCTGTATGGACCCGGGCGCATGGAGGTGTGCCTGAGAGATAGCGGTTCAAATCCAAGCACAGTTTCATGGTGTCATGACTCGGATCGATGAGATTGAGACCATTCAGCTCCTGAGGAAGAGTTTAGAGCAGGAGATTGTTTCGGGGTTCTTAGTGTATGAATTTGTTATGGTGATGTAATCCCTCTCCAAATGAAGAAGAGAGTACAGATCCCCCTTGTAAGGGGACTGGTCCTTTGGTGTAGCGGTTTTGTTGCTGTGCTGGGGAGGCGGTGCGGAGCAGGGAGCGCAAAGGTGTGACTGAGAGACTGGTTTGAACCCGGGGGGGCTCTGACCACACATGCTACACAATAGAAGAACTcacactttttatttctctcattcCCTGGATCTTTGAAGTCTGTTTGATCATACAGGGGGGTGATGTCTGACACGcaatggatttttttatttttaatggaagaaAGTTCATAAACTTTTTGCCTAAAAACTTGAATTAAATGTTccagcatgttttcattttattttttcaacataaacTTCTGGATGAATTGTCATATTCTATAGGGTGAAAGTGGTGTTCTTCTGTCTGAAATATTTACTTATGCTAAGTCGATGGaaaggtgtattttttttttttattatttgtttgtatatggATTGCAGAACGGACATCTGCGTGCCATTACTTCATTTAATGGTGATAGTTCTATGTaccaattatataatataataatgaaacaataaatatacatttaacaatgtAGAATGGCTGTATTGTGaacttaataaacaaacaaaacaaaaca

Function

GO: NA

KEGG:

id description
K01456 E3.5.1.52, NGLY1, PNG1; peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109483 lncRNA downstream 24556 25678187 ~ 25681020 (-) True G87720
TU109482 lncRNA downstream 28159 25676983 ~ 25677417 (-) True G87719
TU109480 lncRNA downstream 47783 25657382 ~ 25657793 (-) True G87717
TU109470 lncRNA downstream 173817 25531473 ~ 25531759 (-) True G87707
TU109456 lncRNA downstream 245014 25412404 ~ 25460562 (-) True G87694
TU109528 lncRNA upstream 55630 25769396 ~ 25769896 (-) True G87756
TU109543 lncRNA upstream 89574 25803340 ~ 25809204 (-) True G87767
TU109586 lncRNA upstream 171568 25885334 ~ 25885977 (-) True G87800
TU109590 lncRNA upstream 183192 25896958 ~ 25898041 (-) False G87803
TU109591 lncRNA upstream 183192 25896958 ~ 25898041 (-) True G87803
AMCG00021691 mRNA downstream 748 25682770 ~ 25704828 (-) True AMCG00021691
AMCG00021686 mRNA downstream 294014 25406702 ~ 25411562 (-) True AMCG00021686
AMCG00021681 mRNA downstream 501675 25202404 ~ 25203901 (-) True AMCG00021681
AMCG00021680 mRNA downstream 620494 25074347 ~ 25085082 (-) True AMCG00021680
AMCG00021679 mRNA downstream 692816 25007690 ~ 25012760 (-) True AMCG00021679
AMCG00021696 mRNA upstream 5591 25719357 ~ 25799664 (-) True AMCG00021696
AMCG00021695 mRNA upstream 160125 25873891 ~ 25884232 (-) True AMCG00021695
AMCG00021699 mRNA upstream 249148 25962914 ~ 25976336 (-) True AMCG00021699
AMCG00021698 mRNA upstream 311632 26025398 ~ 26056857 (-) True AMCG00021698
AMCG00021701 mRNA upstream 370012 26083778 ~ 26089986 (-) True AMCG00021701
TU109433 other downstream 299038 25403650 ~ 25406538 (-) True G87674
TU108932 other downstream 2367092 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 2544599 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 4622006 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 4980696 20721884 ~ 20724880 (-) True AMCG00021534
TU109596 other upstream 191678 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 377488 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 438339 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 1197708 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 3068036 28781802 ~ 28783281 (-) True G88242

Expression Profile