RNA id: TU109518


Basic Information

Item Value
RNA id TU109518
length 201
lncRNA type sense_over
GC content 0.36
exon number 1
gene id AMCG00021692
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25752357 ~ 25753253 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGAATATTTAAAGTCCCTTCCAAGCAAGCAGAAGAAACCAGACGAAGCTGATGACATAAGCACCGTTGTATGACATTGtacacattgaaatacacaacaaGGTAGTAAGAATGGAGGTACTGTAGATTAAAAATTGTAGAGCACTGGAGAAAGTGGTATGAAATTGAACACATTCTTTTGAgaacaaaaagtacaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109467 lncRNA upstream 223468 25529324 ~ 25529585 (+) True G87704
TU109409 lncRNA upstream 380714 25366975 ~ 25372339 (+) True AMCG00021682
TU109347 lncRNA upstream 817227 24934423 ~ 24935826 (+) False AMCG00021676
TU109237 lncRNA upstream 1392144 24359504 ~ 24360909 (+) True G87525
TU109188 lncRNA upstream 1491436 24260962 ~ 24261617 (+) True G87482
TU109541 lncRNA downstream 79201 25832454 ~ 25832988 (+) True G87765
TU109559 lncRNA downstream 105696 25858949 ~ 25870195 (+) True AMCG00021693
TU109567 lncRNA downstream 132193 25885446 ~ 25885703 (+) True G87786
TU109615 lncRNA downstream 337923 26091176 ~ 26094196 (+) True G87824
TU109703 lncRNA downstream 812255 26565508 ~ 26569148 (+) False AMCG00021707
AMCG00021689 mRNA upstream 36467 25714584 ~ 25716586 (+) True AMCG00021689
AMCG00021687 mRNA upstream 74872 25632186 ~ 25678181 (+) True AMCG00021687
AMCG00021688 mRNA upstream 137788 25592537 ~ 25615265 (+) True AMCG00021688
AMCG00021683 mRNA upstream 320446 25418820 ~ 25432607 (+) True AMCG00021683
AMCG00021684 mRNA upstream 337905 25412945 ~ 25415148 (+) True AMCG00021684
AMCG00021694 mRNA downstream 50172 25803425 ~ 25832384 (+) True AMCG00021694
AMCG00021693 mRNA downstream 90441 25843694 ~ 25867501 (+) False AMCG00021693
AMCG00021697 mRNA downstream 168949 25922202 ~ 25943386 (+) True AMCG00021697
AMCG00021704 mRNA downstream 367598 26120851 ~ 26121836 (+) True AMCG00021704
AMCG00021702 mRNA downstream 377229 26130482 ~ 26148080 (+) True AMCG00021702
TU109403 other upstream 387076 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 1575063 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 4516973 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 4521565 21229852 ~ 21231488 (+) True AMCG00021561
TU109668 other downstream 398815 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 3025062 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 3307634 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 3625322 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 3625322 29378575 ~ 29382273 (+) False AMCG00021779

Expression Profile