RNA id: TU109559


Basic Information

Item Value
RNA id TU109559
length 3521
lncRNA type sense_over
GC content 0.39
exon number 6
gene id AMCG00021693
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25843694 ~ 25870195 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCATCAAGCTCTTGGCAGTTCAGGATCTGGCGGACAGAGACGCATTGGAAAAGTTCTGTGCAGAGCTGAACCAGTCGACCCTGCCAAACGTCCGCAAATGGAAGGGCCCCCGGGGCGTGTGGAAATGCACCGTCTCGGAAAAGCCTGTTGGACAATCGCACAAGGGGGTTGAATTTTCTGGTTTCCTGTGGGAAAGCAGTACTGGAATCGAGCTGAAAAATGTGGCTTTACTGGAGAGCCCAGCTGTCAACGGGAATGGGAAGCAGACCTATCCCCGGCCTtatattgcacattttaatATTGGAGTATCTGAGGTAACAATTGTGAATATACACTTGAAAGCCCCAGCCACTGAAGGAGAAGCCAATGGGAAGAGCCATTCGGAAAGCCACAAGGTTTCGCTTTTCACCGAGCCTGTCCAGGATGTGCTTAAAGGAGGAAAGGACTTGATCATAGTCGGTGATTTCAACCTGCCTCCAGACAGCAGTGATTTGGACGTGTTGAAGAAGGAAAAGCTGTCTCCTCTCATACCTGCCAGCACTTTCACCAACATCAGCACCAAGAACCCCCAGGGCTCCCGCAGTCTCGACAACATCTGGGTGAGCCGCGCACTCAAGAAGGTTTACACAGGTCATTGGGCGGTGGTGAGGGAAGGGCTGACCAATCCCTGGATCCCAGATAACTGGTCGTGGGGCGGAGTTGCTTCAGATCACTGTCCCGTGTTTGCAGAGTTTTATGCTGATACTCATCACAAGGAGCCGACCCGCAATGGGAACGGAGTCACGGTGGTGGAGCCCAGTGAGATGATTCCCAAACACGAACGGTGACGGCAGCTGGACTCGTACTCCGAGCgaatattgaaaacacattggGGAATTCTGTTTGTATTAGAGTTCTGTTCCTGGTGACATGAATGAAGGTTACCTATGAATGTGAAATGCACCGCGTTTGCCTTCATTTCTCTTTGGATTTTGTGCTTCAGAGACTAAAtagcatcttttttttttttttgtttaaatgaaaatacaccaacacatacatacatattatatattctataaataaataaatggacaccaaaatgtgccaatataaatatataaatgtttaaggaattaaaagaaaattatagaTAAAAGATAGATAAAACAGTTGTCTATTTTGTGGAATGCActttttgaaaaagtaattttatcTTTTACCTGCGGGAGAATTGGAGACCTATAAATGGGTCTGTCAGGATAAAACTTGAACTCGGGTCTCAAGAGTGATGGAGTCACTCATGGGAAAAGCATTGGAAGTTTGGGCCCTCATATTGTTTAACTTTctacaacatgttttaaatagctGTGTATAAGGGGTGAATCAAAAATGTACCACAATTTTATTCATccacatttgttatttaaacaaaGACATTATACTCACATTTCCTCACCTGTTGtctgtaaatcacattttttcttGTATAACCTTAGAAGGATGGTGAACCTTATCCTGTAAAGAAACCGAAGATAACTATTTTCCTAAATTAAGAATATTATATAATGGCACATCCTTGTTtcactgtgtttctttttcGGATGTCTTGGAAAAAACATGGTAATCAGTCGTTTATGTGCAATCTGTTTTATGTTCAAATTaccacaaatacacacacatatacacttgTAACGTTTAAAGTGTAAAGTTTCTAAACTGCCAACATTTCAGATTCCAATAtgtgttgtaaaaaaaataaggaacagGTCTTTAAAATTGACAGCTGATCATGTTTTTTCCACGACTCCTTTTGTCAAAAAGTATTCATGACAGGTcttaagaaaacacatttgtgagCCCTGCACGTTAGAGCAGATTATATTTGTAATGGTGCAATATTAACTTCCTAATTCGTAGAGCATTGCATTGCAGATGTGTCAGCTTTAGTTTGTAATGTAGTTTAAGAgcaagggagaaaaaaagtaaGGTCAATGTTTACAGCAGGCTTAGGAACTGttagtttttataataattttaaagagaAGTGAgcaaaatcttttaaaatggtGGCACACAGACAGTCCTGTTTTCTAGATTTCCAACAAGCCCATTGCCGCTGCTAGGCTCTCCGTTTTACACTAAATCCAtttgttgaataaaatataCTCTACTTGTCCCATAAAACACAAGCTATTAAAAAAGCTGCTTGGCTATTCGGAATTCCAGTTTGCAGAAATCAAGGAATCGCTGCACGCATGACGTAGTCGTTCACCACATCCATATACACTTGCATATGTGAGAACCGATCTTAATATGAGCATTCTCAGTTCCAGGCCAAGGTGATCTGACCGAATAAGGCCATGTGTATCAATTCAGAGTGCGAAATGCAGATACTGTAACATTCCTTCAGGCGTAAGTCTGTTTCTAAAGGTTAGTTTATAGGCCTTCTGACAACTGCCACTTTtggtgagaaaaaaataaaagcaaaatagaaGGTGACCAGGGATGGTTTTAATGGTTTCTCTCGTTCGCATCACTCACTTCAAAACACCGGATAGCATTTTTGATCTGCCACCTCATATTGACTTTCATACTGCTTGTTTCATACTGcgaaaatatatttacaatttagtAGAACAGCACTTTTCAATACATACACTTATTTATGTGGCTAGTATTGGTTAACCTTGGCTTGGCTGAATAAAGACTGAAATGTCATATAGCTGAATTACGTAACAAGTAACTCCTTTTCACAGAATCTGCACACCTTAACAAGAAACCAAATTCCAAAAAAGTGTAAAAGTTTGAATAGACTATGTCTTTTGGTGGTGACATGCGAATGTTAGTTGATGAAGTAATGCTGCAGAAAAGACATACACAACAGCTAGTAAGTTAATGCGAGTTATAAAACGGACATGGAACGTCTCATGCTTTAACTCTGTAAAGCCCATTAAAGACTTGTGTTTTCTGTGCCCATTTTATAACCTACTTTACAACAGTGTAGGACAGGTTGCAGTCATACATTGAGATGGTGGTGATATAGCATTATCTCAGCATCTTCAGAAAGATTGGTGAGAGATGGaaacaattgaaaatatatatatatatttatggggGAAAATAGCTAGCTAGGTCTGTTTTGGACATTATTGGATATGCACAGCTCAAGACGATGATTAGTGAGAGCACTACAAAGCAGTGATGTGTCTGCTTTAAGGGAAAGTGTTAAACTTTCAGTTAAAGATAAATCTATATGTGACaatgtatactgtataaaaCCTAAATTAAAGGTTCTTAATGAGATGTGACacgcttttttgttttgtttttttcctggtgAATAAAAATCAGCAATGAATGTCAATGTCTTCAAAAATGATAACTCTTGCTCACCTTAAGTATGCACCACTGCCTTCCAATCCCAtcatattttctgctttttctccTTAGTTTCCAAACATggatcctttaaaaaaaaaaaaaaaaaatgtgttctagCATTTTGTAACTATCTGACTTCTATGCTAACTTTGTTTact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109541 lncRNA upstream 25961 25832454 ~ 25832988 (+) True G87765
TU109518 lncRNA upstream 105696 25753053 ~ 25753253 (+) False AMCG00021692
TU109467 lncRNA upstream 329364 25529324 ~ 25529585 (+) True G87704
TU109409 lncRNA upstream 486610 25366975 ~ 25372339 (+) True AMCG00021682
TU109347 lncRNA upstream 923123 24934423 ~ 24935826 (+) False AMCG00021676
TU109567 lncRNA downstream 15251 25885446 ~ 25885703 (+) True G87786
TU109615 lncRNA downstream 220981 26091176 ~ 26094196 (+) True G87824
TU109703 lncRNA downstream 695313 26565508 ~ 26569148 (+) False AMCG00021707
TU109760 lncRNA downstream 840022 26710217 ~ 26713476 (+) True G87939
TU109766 lncRNA downstream 850714 26720909 ~ 26737883 (+) True G87942
AMCG00021694 mRNA upstream 26565 25803425 ~ 25832384 (+) True AMCG00021694
AMCG00021692 mRNA upstream 105822 25752357 ~ 25753127 (+) True AMCG00021692
AMCG00021689 mRNA upstream 142363 25714584 ~ 25716586 (+) True AMCG00021689
AMCG00021687 mRNA upstream 180768 25632186 ~ 25678181 (+) True AMCG00021687
AMCG00021688 mRNA upstream 243684 25592537 ~ 25615265 (+) True AMCG00021688
AMCG00021697 mRNA downstream 52007 25922202 ~ 25943386 (+) True AMCG00021697
AMCG00021704 mRNA downstream 250656 26120851 ~ 26121836 (+) True AMCG00021704
AMCG00021702 mRNA downstream 260287 26130482 ~ 26148080 (+) True AMCG00021702
AMCG00021703 mRNA downstream 282265 26152460 ~ 26161715 (+) True AMCG00021703
AMCG00021706 mRNA downstream 465455 26335650 ~ 26371009 (+) True AMCG00021706
TU109403 other upstream 492972 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 1680959 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 4622869 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 4627461 21229852 ~ 21231488 (+) True AMCG00021561
TU109668 other downstream 281873 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 2908120 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 3190692 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 3508380 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 3508380 29378575 ~ 29382273 (+) False AMCG00021779

Expression Profile