RNA id: AMCG00021696


Basic Information

Item Value
RNA id AMCG00021696
length 3456
RNA type mRNA
GC content 0.47
exon number 37
gene id AMCG00021696
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25719357 ~ 25799664 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGATAATGCCTGCAACCTTACCATGCCCGATCAAGACAAAAAGTTAAAGCGAACAGGTAGAGCACCACAGAAGAAGACAAAAGGAGTCACTGACAAGGAAGTTTCTGATCTCAGAAGACTATTGTCCCTGCTCAATGCCCCAGCAGGAAAATCTCAGTTGCAAGCTGTGAGTTTCAATAAAGCACGCAGCAGTGTCATAAAATCACAGCATCACCCTCCCCAACAAAAGTGCAATGACAGCAATACCAGGAGTTCACAATCCCAATCTGACGAGGCCGTGGAACTGGAGAATTTCAGTGTGAATTACAAGAACGAAAGGAACTTTAGCAGCCACCCACAGCAAAAACTGTTTCTAGACATCTTCACGGTTCTGGTCAAGAACAGGTTCACCTGCAGTGAGTGGGCTGGCCAGGCCCAACCTGATAACTTCCTGCGGGTGTTGATATGTCTGCGCTTACTGATGAGAGAGCTGCTCTACCAGTACATGGAGTCAATTTCAACTTGCTATCTTGAATATGGAGAAGAGCCATTTGTAATGGAAAAGCTGGTCAACATGACTTGTAAGATTTTTctcattACTTTAGTGAAACTTCTTGCAGCCAGAGACAACAGTGTTCTGCTGGGCGCTCTCCTGGCACTAACTAGCTTAGCAGACAGCCCAGTTTATAGAGAGAAGATCGGAGAGCTCAGCATTGTGGAAAACCTCTTGATGATATTGCAGGAATACGACCTGCTTTCGAAAAGGATGGCGGCAGAGGTGCTGCGTCTGCTGTGTGCTGAGCAGTGGGTCAGGGAGCAGGTGAAGGTCTATGAGGGGATTCCCATTTTGCTCAGTCTGCTGCACTCGGAGCACCTCAAGCTGCTGTGGAACGTGGTGTGGATCCTGGTGCAGCTGTGCGAGGATCCCGAGACCAGCGCCGAGATCAGGGTTGACAGAGATTTTGTGTCTGATCGTTCCTCTGTCGGGAGTTTGTCCAGTGCCAACGCTGCTGGCAGGATTCGGCAGCAGCATGTATCTGAAGAGCTGAGTCCTCTGGAAATACTAGAAAACACATTGTCGCTGCAGGCTGCCTGCTGTGCTGCTCTGACAGAGCTTGTATTGGATGACACTAATGCACACCAAGTAATTCAgGAAAATGGGGTCTACATAATAGGGAAATTAGTTCTGCCACATAAGCAAAAGACTGGACCAAAGGCGGAAATGCTTCAGTGCTACGCCTTTAGGGCTTTGCGTTTCCTGTTTAGTATGGAACGAAACCGGCATCTCTTCAAGAGAGTATTTTCGACAGAATTGTTTGAGATGTTTATTGACATTGGCCATTATGTTCGTGACATCACTGCCTATGAAAAGCTGCTAGCAAAAGTCTCCACTCTTTCAGATGAAGAATTAAATACTATCAAAGAAAGTATTGAAACTGCAAATCAGAATAAAGCTCCATCGAAAGTAATCAATGGTTATGCCATTCTCGACCATCTTGGGAGTGGAGCGTTTGGGAGCGTTTATAAGGTGAGGAAACAGAGTGGCCAGAATCTGTTTGCCTTGAAAGAAGTTAATCTCCATAATCCTGCCTTTGGCAAAGACAAGAAGGACCGGGACAGTAGTGTGGAGAAGATTGTGTCAGAACTCACCATCATCAAAGAGCAGATGAACCATGTTAACGTTGTCAGATATTACAAGACCTTCTTAGAAAGTGACAGACTGTATATTGTGATGGAGTTGATTGAAGGAGCGCCCCTTGGTGAACACTTCAATTCTCtcaaggaaaaacaacagcGCTTCACAGAAGATAGGATATGGACTATATTTATTCAGATGTGCTTAGCCCTTCGATACTTGCATAAAGAGAAGAGGATAGTGCATAGAGATCTCACTCCAAACAACATAATGCTGGGTGAAAAGGATAAAGTAACCATAAGTAATCCTGAGATTGTGAAAAGCGAGCCGTATGGGGAGAAGGCTGATGTGTGGGCCGCCGGCTGCATTCTGTATCAGATGGTCACTCTCAGCCCGCCCTTCTACAGTACAAACATGCTCTCTCTGGCCACCAAAATAGTAGAGGCTGTTTATGAGCCAGTTCCAGAGGATGCGGAGATACGGCCAGACATTGTGGAGGTCAGTGCCAAGATCTCAGACATCATGATGAAGTACGTGGATGCCCTCCGTAGCTCCCAGCTCACCCTGGAGAAGAAACTCGACCGGGAGAGGAGACGCACACAGAAGTACTTCCTGGAAGCCAACAGGAGCATGCTGAGTTACTGTCAGGCAGCACCTGCATTAGCCAAGGTAAAAATAGAGAAGTGGGATATTGGATCTGATGAAGACCTGGATACATCTGATACCTCCAGCAGTTCCACTTCAAGCCCAACATCTGCAGGAATCGCTGTGTCACAAAGGAAAGTTCGCCAGATCAGTGATCCTATCCAGAGAATACTTATTCAGTTGCACAAAATTATCTACATTACCCAGcttCCTCCTGCTTTGCACCACAACTTCAAAAGAAGAGCAATAGAGAGATTCAAAAAGTCACTATTCCACCCTCTGAGTAGTCCTTATAActtgaaaacagaaatgaaaaagCTTCTGCAGGGCTGTCCAGAGCTCATAGAGCCCAGCTCCATTAGTATAGACAGTCGTTTCTTATGCCAGTCCTTTGGGGGAAACCTACATGTTCCCGAGGATCAAGGTAGTACAGGAAATGTGAACTATCAGGATGGCATTACATACGAACAGATGCAGACCATGGTGGAGGAGGTTCTGGAGGAAAACGGATACTACAGAGCAGCGTCAAATAGGTGTCACAGCAGTTTAAATTACTCCATATCGCTGAAACCCCAGACAAGACAGGTCCAGCATCTGCAGGCTCTCCTCCACCCCTTTGAAAGCCTGCTCGCCCACAGACCCAATCACGTTCCTGGAGAGGTTGAGCTCCCTGAGCTGGTGCAAGTCCTTAAAGATGCCATCAGGGATAGACGTTATCTGATTGGAGTCCAGGCTGAGCAGGGTGGTGTCATCCTGAGGCGGTGGGTAACTGTATCCTCTGAAACGCCAAGAAGAGTGagtaagaaagagagagagggagaagggaggaGTCCGGCTGTGCTTCTCCGGGAAGGTGTCAAAGGAGGAGGAGCACACCACTCTCCCTACAGTGTCAGCATTCCAGGAACCAGGCAGGAGCTGACCTTTGGAATTCGACCTTTCTCTATCAAAGAGCACACCATGGCTGTGGATCCGAGACATCTGAGTCGAGCTGCCCCCAGTGAGTCTAAAAGGCTGGGCAGAATCAGTGCCTGGCCCAGTGACCTGacaatacatagTCTCTGCAACAGACAGTGCCCTTGCTTAATCATCATATCTTCTAAAGTCGCGGGCATTGAGcagcattgtgaaattgtgctTGGCAGTGGGCTCTGGAGCACTTTGAAATTCACAACAAAGCCTgcaaattaa

Function

GO: NA

KEGG:

id description
K20879 NEK10; NIMA (never in mitosis gene a)-related kinase 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109483 lncRNA downstream 38337 25678187 ~ 25681020 (-) True G87720
TU109482 lncRNA downstream 41940 25676983 ~ 25677417 (-) True G87719
TU109480 lncRNA downstream 61564 25657382 ~ 25657793 (-) True G87717
TU109470 lncRNA downstream 187598 25531473 ~ 25531759 (-) True G87707
TU109456 lncRNA downstream 258795 25412404 ~ 25460562 (-) True G87694
TU109543 lncRNA upstream 3676 25803340 ~ 25809204 (-) True G87767
TU109586 lncRNA upstream 85670 25885334 ~ 25885977 (-) True G87800
TU109590 lncRNA upstream 97294 25896958 ~ 25898041 (-) False G87803
TU109591 lncRNA upstream 97294 25896958 ~ 25898041 (-) True G87803
TU109592 lncRNA upstream 97294 25896958 ~ 25898041 (-) False G87803
AMCG00021690 mRNA downstream 5591 25705576 ~ 25713766 (-) True AMCG00021690
AMCG00021691 mRNA downstream 14529 25682770 ~ 25704828 (-) True AMCG00021691
AMCG00021686 mRNA downstream 307795 25406702 ~ 25411562 (-) True AMCG00021686
AMCG00021681 mRNA downstream 515456 25202404 ~ 25203901 (-) True AMCG00021681
AMCG00021680 mRNA downstream 634275 25074347 ~ 25085082 (-) True AMCG00021680
AMCG00021695 mRNA upstream 74227 25873891 ~ 25884232 (-) True AMCG00021695
AMCG00021699 mRNA upstream 163250 25962914 ~ 25976336 (-) True AMCG00021699
AMCG00021698 mRNA upstream 225734 26025398 ~ 26056857 (-) True AMCG00021698
AMCG00021701 mRNA upstream 284114 26083778 ~ 26089986 (-) True AMCG00021701
AMCG00021700 mRNA upstream 291563 26091227 ~ 26105391 (-) False AMCG00021700
TU109433 other downstream 312819 25403650 ~ 25406538 (-) True G87674
TU108932 other downstream 2380873 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 2558380 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 4635787 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 4994477 20721884 ~ 20724880 (-) True AMCG00021534
TU109596 other upstream 105780 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 291590 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 352441 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 1111810 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 2982138 28781802 ~ 28783281 (-) True G88242

Expression Profile