RNA id: AMCG00021698


Basic Information

Item Value
RNA id AMCG00021698
length 1272
RNA type mRNA
GC content 0.48
exon number 14
gene id AMCG00021698
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26025398 ~ 26056857 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCACCGCCGGCCGATATAGTGAAGGTGGCCATCGAGTGGCCgggggccttccccaaactcaTGGAAATAGACCAGAAAAAGCCACTCTCATCTATTATAAAAGAAGTATGTGAAGGctGGTCACTGGGAAACCATGAAAACTTTGCTCTGCAGCATGCAGATGTCACTAACTTCTATATCACAGAAAAGAATcgtaatgaaataaaaaatggtgcAATCCTACGACTGACTTCATCTCCTGCCCACACTGCCAAGCAGCTGCACGAGCGGATCCAGTCATCCAGCATGGACGCCAAGCTTGAGGCCCTCAAAGACCTGGCCAACTCCTCCCGTGACATCACCTTTGCCCAGGAATTCATCAACCTGGATGGCATCACTCTGCTCACACAGATGGTGGAGAGCGGGACAGAcTTCGGCGATATGTTATCATTTACACTGACGGCTTTTGTTGAACTTATGGATCACGGCATTGTCTCCTGGGACACTTTTTCATTGGCCTTCATCAAAAAGATTGCCAGCTACGTGAACAAGACTGCCATGGATGTCGCCGTGCTGCAGCGGTCCCTGGCCATCCTGGAGTCCATGGTGTTAAACAGTCACGATCTCTACCAGAAGGTGGCACAAGAGATTACAATTGGTCAGCTTATTCCACATCTGCAAGGAACTGATCAGGACATTCAGACGTATACTATTGCTGTAATTAATGCACTGTTCCTGAAAGCACCAGTGGAGAGGAGACAGCTTGATGTGGAGGACAATGTGAACATCCTTGATTGTCCTCTGACAGAAATGTCACACATCTTGGCACAGAAGCAGCTGCGCTCCATTATTTTAAGTAATGTTATACGCAGCAACAAGCCCATTAATGCCGAAATGGCCCATCAGCTCTATGTCCTTCAAGTGCTCACCTTCAACCTCCTGGAAGACCGGATGATGACGAAGATGGATCCCCAAGACCAGGCCCAAAGGGACATTATATTTGAACTTCGCAGGATTGCATTTGATGTCGAGTGTGAACCTAATAACAGTGGTAGCATAGAGAAACGCAAATCTATGTACACCAGGGACTACAAAAAGCTGGGATTCATTaatCATGTAAATCCAGCTGTGGACTTCACACAGATCCCTCCAGGAATGCTGGCTCTGGATAACATGTTGTACTTTGCCAAACACCATCAGGATGCCTACATTCGGCACGAGTGCCCGTTTGGTCGAAGCAGCATCGAGCTGACGAAGATGCTTTGTGAAATCCTCAAAGTGGGAGAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109590 lncRNA downstream 127357 25896958 ~ 25898041 (-) False G87803
TU109591 lncRNA downstream 127357 25896958 ~ 25898041 (-) True G87803
TU109592 lncRNA downstream 127357 25896958 ~ 25898041 (-) False G87803
TU109586 lncRNA downstream 139421 25885334 ~ 25885977 (-) True G87800
TU109543 lncRNA downstream 216194 25803340 ~ 25809204 (-) True G87767
TU109687 lncRNA upstream 338094 26394951 ~ 26395179 (-) True G87882
TU109688 lncRNA upstream 361823 26418680 ~ 26418899 (-) True G87883
TU109689 lncRNA upstream 375287 26432144 ~ 26437893 (-) True G87884
TU109775 lncRNA upstream 617221 26674078 ~ 26701116 (-) False AMCG00021719
TU109817 lncRNA upstream 741234 26798091 ~ 26800715 (-) True G87980
AMCG00021699 mRNA downstream 49062 25962914 ~ 25976336 (-) True AMCG00021699
AMCG00021695 mRNA downstream 141166 25873891 ~ 25884232 (-) True AMCG00021695
AMCG00021696 mRNA downstream 225734 25719357 ~ 25799664 (-) True AMCG00021696
AMCG00021690 mRNA downstream 311632 25705576 ~ 25713766 (-) True AMCG00021690
AMCG00021691 mRNA downstream 320570 25682770 ~ 25704828 (-) True AMCG00021691
AMCG00021701 mRNA upstream 26921 26083778 ~ 26089986 (-) True AMCG00021701
AMCG00021700 mRNA upstream 34370 26091227 ~ 26105391 (-) False AMCG00021700
AMCG00021710 mRNA upstream 383798 26440655 ~ 26472215 (-) True AMCG00021710
AMCG00021709 mRNA upstream 507349 26564206 ~ 26566938 (-) True AMCG00021709
AMCG00021716 mRNA upstream 586897 26643754 ~ 26656084 (-) True AMCG00021716
TU109596 other downstream 117393 25905444 ~ 25908005 (-) True G87806
TU109433 other downstream 618860 25403650 ~ 25406538 (-) True G87674
TU108932 other downstream 2686914 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 2864421 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 4941828 21063858 ~ 21083570 (-) True G86808
TU109647 other upstream 34397 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 95248 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 854617 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 2724945 28781802 ~ 28783281 (-) True G88242
TU110186 other upstream 3012344 29069201 ~ 29071760 (-) True G88288

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00029442 False 2409 mRNA 0.50 22 NC_007130.7 33888548 ~ 34063567 (-)