RNA id: AMCG00021699


Basic Information

Item Value
RNA id AMCG00021699
length 2005
RNA type mRNA
GC content 0.40
exon number 6
gene id AMCG00021699
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25962914 ~ 25976336 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTATGCAGGTGGTGAAGGAGCAGATCATGAGAGCGTTGAACACAAAGCCTAATTCGCTGGACCAGTTTAAAAGTAAACTGCAGAACCTGAGTTACACCGAGATCCTGAAACTCCGCCAGTCTGAGAGGATGAACCAGGAGGACTTCCAGTCTCGGCCGATTGTGGAGCTGAGGGAAAAGATCCAGCCTGAGATCATGGAGCTGATCAAACAGCAGAGGCTGAACCGGCTCTGTGAAGGAACGTGCTTCAGGAAGATCAGCAGCCGGCGGCGACAAGACAAGTTCTGGTATTGCCGTCTGTCTCCGAATCATAAGGTCCTGCATTATGGAGACTTGGAGGAGAGCCCCCAGGGTGAAGTGCCCCATGATTCCCTGCAGGAAAAATTACCAGTGGCTGATATCAAAGCTGTTGTGACTGGAAAAGAGTGCCCCCACATGAAGGAAAAAGGAGCTCTCAAACAGAACAAGGAGGTTCTGGAACTTGCTTTCTCAGTCCTGTATGAGTCAGATGAATATCTCAATTTTATTGCTCCTGATAAGCATGAATACTGCGTGTGGACGGATGGCCTGAACGCTCTCTTGGGGAAGGAGATGGGCAGTGACCTCACCAAGAGTGACCTGGATACTCTGCTCAACATGGAGATGAAGCTCCGCCTCCTGGACCTCGAGAACATTCAGATTCCTGAGGCCCCGCCCCCAATTCCCAAAGAGCCTAGCAACTATGACTTTGTTTATGACTGCAACTAACAATGGACTTGACCAATTATTGCTTATTCGAACTGGAAAGAACTTGTGAgagaacacataaaaaaaactggATCTGTCTTTAACCCTTTCTTTCTTGCTATACTTGCTAAACTTACTTTTTTaaggtgtattttaatgtatttgcagCACTTAACTTGCCTGTGAGGCCTTCTGAACCGTATCATCATACCAACCACACCAGGGCTAGCAGAGGTCAGCCCTGGCCAAGccaagaaaaatgtacaaagtGTTCACCATACCAAACATCTCAACTCAATGCAGCAGTGAAGGATTATCCCAGAGGACTAGAATCACTTGTGttacagattgtattttttttctttttgttgtaaaatatttttttgaagcTTTCTGCTTTtcggttgttgttttttaaatatatactttaaatagaTGTGTATTGCCTAAGACTGTGGTTTGAAACTAcaggagaaaatgaaatgttgcacATTCTTACATGTGGCAGCTATGTATCCATGAAGAAAAGTGATTtacaggttgttgttttttattataaattgcCATAGATTTTATAGATTTATTGATATCTTATTCACGCTCCACAGAGACTGTTAATTCAAGTGCATGATCCTTAACTTAGCACTATCAAGCACAGAAACTGCCTCCGACatctaatttaataaaatctgcTTTGAGCTTAAAGGCACAAGTCCTGGTGCCAGTAGAATAATAATCCGTGCTTGTGACTTGTTAATTTTCTCTGTTTATTGTGTTCATTTATGTTGGCTGTTACATTCCAAAGCAACATTTGGCTTTTGTTGAGTAACTGGTGTAACCTTTTTTGTGATGTTTGTGAAGCTGCCAATTAGTCAGTATTATGTCATTGTTTCagtgttacaaaacaaataactcaAACtctgttacaaaaaataaataaatgcaaaatactggATGATGTTTTTAACCTCATCATCAattgaaagaaatgtacatttcatttgtaaaatatcaGTCATTCTGTTtatatgattttcttttgttaagCCATTGAAGTATCTTTCTAGGTAACAATTCCCTTAAATCTgctgtttacattaaaattcCATTTAATTAATCCTCACTCGCCTCTTGTGTACACTTGTTTCTGCATAGCCATGTTTGTTGcacatattacacattttcttctgcCATTTCTCTCCTCGCTCTATCAATTGAAGCAGCTGTGTATCATGGAGTATGGCTGCAACAGCATGATCggcagagttaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109590 lncRNA downstream 64873 25896958 ~ 25898041 (-) False G87803
TU109591 lncRNA downstream 64873 25896958 ~ 25898041 (-) True G87803
TU109592 lncRNA downstream 64873 25896958 ~ 25898041 (-) False G87803
TU109586 lncRNA downstream 76937 25885334 ~ 25885977 (-) True G87800
TU109543 lncRNA downstream 153710 25803340 ~ 25809204 (-) True G87767
TU109687 lncRNA upstream 418615 26394951 ~ 26395179 (-) True G87882
TU109688 lncRNA upstream 442344 26418680 ~ 26418899 (-) True G87883
TU109689 lncRNA upstream 455808 26432144 ~ 26437893 (-) True G87884
TU109775 lncRNA upstream 697742 26674078 ~ 26701116 (-) False AMCG00021719
TU109817 lncRNA upstream 821755 26798091 ~ 26800715 (-) True G87980
AMCG00021695 mRNA downstream 78682 25873891 ~ 25884232 (-) True AMCG00021695
AMCG00021696 mRNA downstream 163250 25719357 ~ 25799664 (-) True AMCG00021696
AMCG00021690 mRNA downstream 249148 25705576 ~ 25713766 (-) True AMCG00021690
AMCG00021691 mRNA downstream 258086 25682770 ~ 25704828 (-) True AMCG00021691
AMCG00021686 mRNA downstream 551352 25406702 ~ 25411562 (-) True AMCG00021686
AMCG00021698 mRNA upstream 49062 26025398 ~ 26056857 (-) True AMCG00021698
AMCG00021701 mRNA upstream 107442 26083778 ~ 26089986 (-) True AMCG00021701
AMCG00021700 mRNA upstream 114891 26091227 ~ 26105391 (-) False AMCG00021700
AMCG00021710 mRNA upstream 464319 26440655 ~ 26472215 (-) True AMCG00021710
AMCG00021709 mRNA upstream 587870 26564206 ~ 26566938 (-) True AMCG00021709
TU109596 other downstream 54909 25905444 ~ 25908005 (-) True G87806
TU109433 other downstream 556376 25403650 ~ 25406538 (-) True G87674
TU108932 other downstream 2624430 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 2801937 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 4879344 21063858 ~ 21083570 (-) True G86808
TU109647 other upstream 114918 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 175769 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 935138 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 2805466 28781802 ~ 28783281 (-) True G88242
TU110186 other upstream 3092865 29069201 ~ 29071760 (-) True G88288

Expression Profile