RNA id: AMCG00021700


Basic Information

Item Value
RNA id AMCG00021700
length 3685
RNA type mRNA
GC content 0.38
exon number 5
gene id AMCG00021700
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26091227 ~ 26105391 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTAGTCTCCTCTTCCCACAGTGCCTTGCGCGTAAGGAGAGTGAAGCAGCATGGGAAATCTGGCAGGACGGTACAGTGAGCTGGCAGAAAGAGAATCTATTTGATAAGAAACTTTAAACACTGTCAATTTAAGTTTTATATGAAATTTAAACAACcgagtatatatatttattgattgatttgtacTTAATGCACAAAATATAACCAAGAAGGCAGCTATTAAGTCTTTCTCTGGGTTGTGCTATAACCAGCGTGGTAAGCAAGCATGTGGGAACAGCCCCATGAGACGAAACAGCTCGGCTTTTTGAAGAAGGCCTCCCTTTATTACAGAGACATCTGCCCGGAGCAAGCCCGTGTTCTCGCgaggAGACATCAGTGCATGGAAGGTAGAAAGCTGCCGGACACAATTATTTGTCCACAATGTTTCCAGTGGCTTCTTCCTGACAATCACAGAGTGAGATTCAAACCTAAACGGAAAGCATCCCTGCAGGTTCAGAGGATATTGAAGAGAGAAGCAGCACATAGGATACTCAGCCTGAAGCAAACCAAGATTTTGAAGCGGTTTCTGAGTTCAACCAACACAATGCTGGTTACTTGCTACAACTGCAACAAAACCACAAGACACAGTGGTGTAAACCGAGATTTCTTAAATGCCTTTTCGAGGAGCCTCAGCACGCCCGCCAATATGAACAAACACAAGGCAGCCAGCAGGACCCCTCAGTCTGCTAACAAAGGAACTACACCGCTGCCAAAGTCTACCTCAAAAAACGCAAGCCCAGCTGGAACCCCGAGGTCGGTTTCCGCTGAGCCTGccagctcctcttcctccaaGTCAGCCAGTGCAAAGAAGTTTGCATTTTCTCGTCTCAAAAGGTTATTGatcattgaagaaaaacaaaagaacaagaagGGCGGCCTGCAGGACTTCCTCTCTTCTCTGTGAATGATATGAAGCTAAACTGTGGCAGTGGTTTGGGCATAAGAAGTGGAGTCTGATGCTCTGGGATTCAAATCCTCAAACTGAGATGAAATGGAAGGGTCTGTCATCTGCCAGTGAGCTTAACTCTAGATGTATGGGGAATGATCTGCAGTTCTTCTAAAGGTCTTTCCTCTGGTAGTTTAATGTCTTGATGGGGGGAAAATGATTCCTCCAGAGCATCTCGGGGCCCACGCAAAGAGTCTCTATCCCTTTGGTAATATTGGTGCCAGAGAACCGACTATCTTCACTGCCGAGTATCAGCCTGCTGTGTTGCACCAGAATAGGGCCGAACGCCTGCATACCGATATAAGGCTAGGAGActtagtgtgtttatttaattggggttcaataattgaaattgaaattgaattgaaaaatgtaggtgtaTGTTTAAGCAAGCTCTGTCTTTGAATGTTCAAATtctgatgttttcatttatgtaGCTTCTTTGAATTCAGAAGCCTTTAACCTCTTGATATTTACAAGTATAGATGTATTTTTGGATAGTTTTACATAAGGCCTTTTCAAAGAATGTGTACTTTGAAAGCCTCAAGGCTTCACACAGAAGTGGATTTGTGGCACACCTTATTTTTTGGATAATAGTCATTTGGGTACAGTGTTCAACTTGGCTTGTTGGTAATATGAAGATCGCCTTTATGGGCATTGAATTAATTAGctaacatatttacatttaaaataaaaaaaaaaactgtttggcCTTAACTTGTTGGGGGGCTTATTTGTGATGGGATAAGaccaaatatacatacaaaggCTATTACAATTCTTTCTTAAATGATTTTTGTTCATGCTGTTTACATTGTTTACCTAAAAGTTTTGGTGTTCTAAAGGAAAAGGtccttaattttatttttcccaatcAATTGAAATAGgttcactgtatgtttttttttttttttttactgttttttaaataccttgttaaaatattgaaagcataattaaatttcttaatacagtacattaacaggtcattttgcaataaataaatacatatactgttattttgttttatgattgtttaaatatttaacttagatctatcattcatatatataggttttttatttttatgagatatgcaatgtgttaaatattaaagtgaGTTTCATACATGCTCTAATTATAGACGGGTAGATTTGTGTTCCTGTTTCAATATTCTTAAAAAGACACCCATGTTCATTTTTAAGGATGTTACTATCTAGTTATGGTTCAACTGCATCATGCATTTTCCATAGTCATAAAAACGTCATACGatcttaaaatatgttgtttagTAGGGactttttatgtaatgtataatttgtgtttattacattAAGGGAGAAAACATTGCAATAATTTATATTAGCAGTACACGTCTATATTACCATTTAGACTACTACCAAGTATAACGGGATACTTTAGCAATTAGTTTGTATCTAGGCACATTATcgatttttttataatattgtatcAAAGTGAGTTATTAAAACATGCTATTCGTGTTTTAGTTTTCGCCATAATATTCTTTACAATTAGTGGTTTTGTTATCTGCTTAACTACAACCGTGTTTAATAAATTGGCACTTGTTTCCTCGCAGTCCTTGTGGGATGGTTAGCGCTGCTTTGGTTCTGTCAGACTGTCCAGTATGTGCGTCGtcgttgtttgtttgtttgtttgtgtatttgttctgtattgTCAGGAAATGCTGATGAGGACGGCTAAAAAGCGTTCAGGACTATTGTTccaacaactgaaaaaaataatccgTTTGTGCAAATGTCATCAGAAGCTATGTTAAGCGGGTGAAAACGTAAATCTAAATGTACTATTTCTGTGTTACTcaggaaatgtataataatgaatagatgtattgtattttggcaGCATTTCTAGTGGATATGCATTTACCGTCCTCGTCCCTGTGTGCAGTGTAGACGGTGCTGACCTCCAGCTGCAACACAGGCAGTGACGGCACTGCGAGCGCCTGCGTGGTGCAAGCGTGACGCGCAGGCTTGGTTTTTGTGACAAACCCGCATGGATCATTCTGTATGCTTTCCTATCTTGAGAAGTTTAATCTATTTTGGAAAAAGGTCTAATTGTACTCATATTCACGATCTCTGAGGCGAGACTCAAGCAAagctgtatttaatatatatgtatattggtAATAAAGACATGGCTTATTGAATTAGTTGTACGTAGAAATATGATcgatttacaatattatacctATCAATGggacatacatatattttttatcgtttattttatttctctcattcTGTAACCATTTGTTTAACCATTAGTGTACTAACTGTTGGAAATTACATTAGTTACCATATTGATACCACGTTTCACAGTTCGCATGAAGAAACAAGTAAATTGGGTTATGGGGCAGGGGGTTCTGTAAGGAATCTACAATAATCTTGTAAATAGTGGTTTTCTGTTAGTTTGAGAAAATTCCAGGGTGCCAAAAATTGATTTCAGTCTAATTTAGGTTATCCTATCTGAAACATGCATGCCCAGCAAACAAATGGTGCTTGCTCGTGATGAGTTGGTGGGATAGCCTGGCTGAGGTCCTCAGTTCTGCAGGATTATTTTtggttgtgtgtatgtgtaatgtGAATAAGCTGCTAATATAAGTCTGCCTAATAAAGCCATGTCTCTAAATAGACCGGGCATTTGAGAACTGCAAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109590 lncRNA downstream 193186 25896958 ~ 25898041 (-) False G87803
TU109591 lncRNA downstream 193186 25896958 ~ 25898041 (-) True G87803
TU109592 lncRNA downstream 193186 25896958 ~ 25898041 (-) False G87803
TU109586 lncRNA downstream 205250 25885334 ~ 25885977 (-) True G87800
TU109543 lncRNA downstream 282023 25803340 ~ 25809204 (-) True G87767
TU109687 lncRNA upstream 289560 26394951 ~ 26395179 (-) True G87882
TU109688 lncRNA upstream 313289 26418680 ~ 26418899 (-) True G87883
TU109689 lncRNA upstream 326753 26432144 ~ 26437893 (-) True G87884
TU109775 lncRNA upstream 568687 26674078 ~ 26701116 (-) False AMCG00021719
TU109817 lncRNA upstream 692700 26798091 ~ 26800715 (-) True G87980
AMCG00021701 mRNA downstream 1241 26083778 ~ 26089986 (-) True AMCG00021701
AMCG00021698 mRNA downstream 34370 26025398 ~ 26056857 (-) True AMCG00021698
AMCG00021699 mRNA downstream 114891 25962914 ~ 25976336 (-) True AMCG00021699
AMCG00021695 mRNA downstream 206995 25873891 ~ 25884232 (-) True AMCG00021695
AMCG00021696 mRNA downstream 291563 25719357 ~ 25799664 (-) True AMCG00021696
AMCG00021710 mRNA upstream 335264 26440655 ~ 26472215 (-) True AMCG00021710
AMCG00021709 mRNA upstream 458815 26564206 ~ 26566938 (-) True AMCG00021709
AMCG00021716 mRNA upstream 538363 26643754 ~ 26656084 (-) True AMCG00021716
AMCG00021719 mRNA upstream 595717 26701108 ~ 26718508 (-) True AMCG00021719
AMCG00021724 mRNA upstream 699649 26805040 ~ 26824298 (-) True AMCG00021724
TU109596 other downstream 183222 25905444 ~ 25908005 (-) True G87806
TU109433 other downstream 684689 25403650 ~ 25406538 (-) True G87674
TU108932 other downstream 2752743 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 2930250 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 5007657 21063858 ~ 21083570 (-) True G86808
TU109676 other upstream 46714 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 806083 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 2676411 28781802 ~ 28783281 (-) True G88242
TU110186 other upstream 2963810 29069201 ~ 29071760 (-) True G88288
TU110330 other upstream 3624686 29730077 ~ 29742808 (-) True G88405

Expression Profile