RNA id: AMCG00021701


Basic Information

Item Value
RNA id AMCG00021701
length 1570
RNA type mRNA
GC content 0.40
exon number 4
gene id AMCG00021701
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26083778 ~ 26089986 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACACGAAACATTCCGAGGACTTCCGATAGCAAGGGAACCATATTGGATTTTGAAATGTGGTTATATGAACCAAACCAAGAGTGTGCCATGACTTCTGTCGCgtctgaaattatatttacacattagTGTTTAACATAATATAGTTcttagttaaaaatatatttccgcGCTGTTGCAATGTCCAAAAGAAAGCGACCCAGAGACGACGACGACAGGGAAGAGCGCAGAAGACACAAGGACGAGAGCAAGCACCATGACAAGTACACGACGAAGAAAACCAAAGAACTTACCCAAGAAgtgaaaaaactgaaacacgTAGAGACCTTttacGAGAAACCTCCTCCTGGTCTGATTAAGGCACATGAAGACCCAATGTATGACCTGATTAGAGAAAACAGACGCCATGAAAAGGAGATGagGATACAGCAGCTACAGCAACTGCTAGAAGACACGACCTCTGACTcggagagcagcagcagcagcagcagcaactcaTCATCATCACACTCTGACAAggacaggaagaggaggaggaagaagaaggacaagaagaagaaagagaagaaaaagaggaaaaagaagagaaagcacAAGTCTTCCAAATCAAGTGAGAGCTCTGGATCAAACTGAGAGCTTTGCCGAGAAACGCAAGGGCCAGGTCCCCAGCTTTGAGCTTCGGAGTTTCTTATGCATTCTCTCGGAAGAACTGGAGCCGACAGCCTCTGACTGGATTGTGTGCTGCGCTGGTTTGCTCCAGCACAGATATCTGCCCGTACTGAGCCTGTCAGCCCTTTGTTCTTTATTCACCAGTGTCAGAACCAGTAAATTATGCATGGATTTCCAGCTTTCCGTTTGTCAAGGGTGACAGAGTGATTAACCGTTTCTTACAGAATCATATACCACGGTTGTAATTCTGTGATGGTGTGTTATAAAAATCTGCCTTGTGTTGTTTCAGCACCATTCCTAAAGCATCACATGTGAGAGAGAAGTGGGTCATATCAATGGAATTGTGGCTAGCTTGCCTAATTAGAGAGGTGTGGTATAGGGAATGCATGcatttctgttaaatgagcaCTTTAGCACTACTATGTTCAAACAGTATGTAAatagtgtaaaataaattgtattaatgaaaTGCAAGTATGTGTTCCTCTTGTTTTTATGAATTATCTATTCAAAGACAACATTAGGCttagaggattttttttaaacatattggcTAATTAAATCTATTCACAGCTTTAAGTAAGTGTAACCAGTTGTTATGACCACACAGCTTTATGCCTGTAAGGTTGTGTTGAAAAGGTTTTGTGAATTTGTGAGTTCTATTCAGTGGTTTCTGTAAAACGTTTAACTTGTATTTACAAAGTTTCTTGTTAAGATCTTGGTCACAGATCattcagttctgtttttgtgatACACTGAttactgcaatacattttaattgaagaatGGGAGCAGAATCATGCAAACAGAGTACGTCTTGAATCAAGATGATTATGaactaaaacattaataaaacatttgaacaatagCCTGTTCtcagactgaaaaataaatacattgcag

Function

GO:

id name namespace
GO:0031231 intrinsic component of peroxisomal membrane cellular_component
GO:0005777 peroxisome cellular_component
GO:0005778 peroxisomal membrane cellular_component
GO:0005779 integral component of peroxisomal membrane cellular_component
GO:0044438 obsolete microbody part cellular_component
GO:0044439 obsolete peroxisomal part cellular_component
GO:0031903 microbody membrane cellular_component
GO:0042579 microbody cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109590 lncRNA downstream 185737 25896958 ~ 25898041 (-) False G87803
TU109591 lncRNA downstream 185737 25896958 ~ 25898041 (-) True G87803
TU109592 lncRNA downstream 185737 25896958 ~ 25898041 (-) False G87803
TU109586 lncRNA downstream 197801 25885334 ~ 25885977 (-) True G87800
TU109543 lncRNA downstream 274574 25803340 ~ 25809204 (-) True G87767
TU109687 lncRNA upstream 304965 26394951 ~ 26395179 (-) True G87882
TU109688 lncRNA upstream 328694 26418680 ~ 26418899 (-) True G87883
TU109689 lncRNA upstream 342158 26432144 ~ 26437893 (-) True G87884
TU109775 lncRNA upstream 584092 26674078 ~ 26701116 (-) False AMCG00021719
TU109817 lncRNA upstream 708105 26798091 ~ 26800715 (-) True G87980
AMCG00021698 mRNA downstream 26921 26025398 ~ 26056857 (-) True AMCG00021698
AMCG00021699 mRNA downstream 107442 25962914 ~ 25976336 (-) True AMCG00021699
AMCG00021695 mRNA downstream 199546 25873891 ~ 25884232 (-) True AMCG00021695
AMCG00021696 mRNA downstream 284114 25719357 ~ 25799664 (-) True AMCG00021696
AMCG00021690 mRNA downstream 370012 25705576 ~ 25713766 (-) True AMCG00021690
AMCG00021700 mRNA upstream 1241 26091227 ~ 26105391 (-) False AMCG00021700
AMCG00021710 mRNA upstream 350669 26440655 ~ 26472215 (-) True AMCG00021710
AMCG00021709 mRNA upstream 474220 26564206 ~ 26566938 (-) True AMCG00021709
AMCG00021716 mRNA upstream 553768 26643754 ~ 26656084 (-) True AMCG00021716
AMCG00021719 mRNA upstream 611122 26701108 ~ 26718508 (-) True AMCG00021719
TU109596 other downstream 175773 25905444 ~ 25908005 (-) True G87806
TU109433 other downstream 677240 25403650 ~ 25406538 (-) True G87674
TU108932 other downstream 2745294 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 2922801 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 5000208 21063858 ~ 21083570 (-) True G86808
TU109647 other upstream 1268 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 62119 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 821488 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 2691816 28781802 ~ 28783281 (-) True G88242
TU110186 other upstream 2979215 29069201 ~ 29071760 (-) True G88288

Expression Profile