RNA id: TU109703


Basic Information

Item Value
RNA id TU109703
length 3298
lncRNA type sense_over
GC content 0.38
exon number 2
gene id AMCG00021707
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26535093 ~ 26569148 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACTCTTGACATGTTTTGCAAATGCAACACAGACAATTAGTCAAACGCCGGACATTACACTTTTACAGTACAGAATATAGAAGTCTTTAATGCAACTCTTACCTACAAATCGTATATTCCTCCCCATCTGCACACATTATTCTGCACAGAGGTGCAAACTCAGTGAGAAACTGGCCACCCTGCATGAAGAAATAAGCAAGTAAATATAGAATAGTCTTTTTTCAAATACTCtaacatttacaattacatttaaatacctaCACTTTGGCATTATCcgttattcatgttatttatgtttttctacaGCTTCATAATAACCATTTTTTGCAAACACATTTGTGAGCTTCAGTAAACTAAAAATGCttgaaaataaaaggcaaacgggtacaaaaaacaaaaaaatgaaaccaagtGTAACAATGCGACGCACAAAACTGCACCTGCTGTCCACTGGAACAGAAGTACGAGAAACGGTTCAAACCAGTGACAGGAAGCACATGGCTTTAGGGCCAGGTTTGTCAGTTACCAAAATACCAGACAGTAGCCCATTCATTCATCTGTGCGTGTACGAGTCAAACACACCCTCTTGGATTTCCCAGAAACCTTGTTCTGGAGCCGGCTGCAGTTGGCACTGATCTGGTAATTGATGCTCTTGATTTTTTTGCCTTGTTGTACAATTGGGTGCGATTCTGCCAGTGTGATGACACAGATTCTGTGAAAGACATATAGTGGGTTATACAAACAACTGATAAAAACAGCATGTTTTGGGGTGTTCCCTGTTCTGAAGCACATTGACTGTCACCAGTCTACCTTTACATCCAAGCCAGACCTGACAAATTGATAAACACACCCTTCCAGTACATGTGGAAAAACCCAGTGTACATACAACaaggattaaaacaaattaatcctCATTGGCCattcagaagtatttacaaattCACTCCAAAGTCACACAGAAAGGCAGCCAAAGATCATTTCTCACTGGAAGGAATTGCTGCAGGCAGCTTGACATTTTTGTATACCATCGTTCTGTGACTTTTGTATCCAGATTTCTTCGGTTTTCTCCAATGCAGGATAGTTGCTAAATGTGCTCTATATTCCATGAACTGTATCAAATGTGACAAAAGATTAACCCTTGAAACTTCATGTACAAATCAGCCAACCCAATGAGTAACTGTCATTTAAATAGGATTGGAACGAACTGCAAATGGTTCTCACAACACTCCTGGTTCAAAACCTGTCAATCCATTTGGCTGCCTTCATTAAGAACTTCGAAATTAGGACTTCATCTCAAAAGCCACTACTTTTTCTCCAATTGTAACATCAggagaaaatgtaagaaatattcCTTTAGAATTCAAAAATGTGCCTTtacgttttcttttttggtacaCATCGGCTATGATGAGGAAGTCGTCTGAAAATCACTACATAATGTTAAAGTTGCCATAGAAACAACTGGTTCCCATGCAATGCACTTGACTTAATTAGGAAACAAGATGCTTATGAAACAATTTACAGTCAGTAGGCATTTAATACAAAGGACGCGGTGGGAGGATTATGCTCCCAGCCTGACATGATGATTACCCAAGGTTAACCTCATGCATACAAGTCAATTTAAATTTTTCCCCAAGTTGTTTAACATATAAACGTCTTAACTCTTTCTGTGTGCACTAGAGGAACACCGTTTCACTGGCGTCGTGCTAATGTGcaaatattgtcattttcattttcttatcttGCATAAATGTTTCTGCGGGAATAAaacttcaaacacaaaataattccCTTCACAGCATAAATAGAAGTTCCAACATGTTTTGGTTTCATCTGTGATTtcaaaagtgaaatattttgcCATGTGGCTTTCATGCACTAAATAAAGCCCAGTGGTTAATGTACTTAAAatgaatcatttaaattattcctgctgtatttttagtatccaagtctttttttaataattcattttctgCAGAAATGAATTAATCTCATCATTATTTACAGCTGCCACATTGATTTTCAAGACGACCCGTGTTATTGGAGCACATGCAAAAGATTCCTTGTTCACAATTTGACTTCGTTAGGGGTATTGATTGCATGTCTTCACTAGCTAATGACAAGTGCAATAAAGTGGAACATTAAGCCTTTATCAATTTTCAAGTGCCTGTAGGTGGGCACTAGAAACCTGTAATGAGATCAGACTGAAAGTGAATATCACTAATGAGGGGAGAAGCATTCTTAGAAGTTTGAACTTAACCAAGAACCGATATTAAATAATGACGTTTCTGTtgatagtaaaataaatacatttaataaccaCAGTAAACGTCATTTTAGAAGCTTAGATATGATACATAGTTAGCAATTAACTTTTCCAACAGATGCGTTTAAAAAGCTTAGCACTGTCCTTTATCAGTCCCGGAGAGGCCCtaggtgaaaaaaataaaattatttgttgTTAGTCCTTTCAAAATCTCCACAAATTCCAAGTACTAatgcaatgttttcattattaattagcCACCACTTTGAGAGACATTTTTCTTTAAGAATATTCTTACAATGTGCatttaggaaaacaaacacccaTGAAGACTTATATAGTCCCTATTACACTGCAGCTGGGCTTTCTGCAGCTTAACCTTGACATACACAGGTTAGTGAAGCGACTGTACCTGGCCTACTTGTAGAGAAAAAGCTGATTTGGGTCTAAAATGGTTTTTAATTGCACCAGTACTCCACTATTTCCAAGACCTCGGGCAGCTGCTGTCATTATATTGATCAGTTTGGGGTTCATTGAATAGATTCAGTAGAGGGAGCTCAAGCAGCAGGTTTCATGAGAGCCACATTTCAACCTGTATACACCTTTTTAAAGCTCATGGGAATGGCATGTGAAATGCTCTTACCGGTTTGAATGCTGTAGGATGCAATGGTCTTCACACGGTTTATTCTTCAAGTCGTTTTATACCACCGGGTAAAATACCGATCGATTACAGAAGGAGCTCCGCTTTCCTGCACAGCAGCCATCGATACTGAAAAGTGAATCCGACAGATAAGATAATAAATGTAACGACAAAATATACGATTAGTCTCACATAACGGTGCACGTCGAGCTCAATAACTAACTTCTCCCGAGTCCAGCCCGGCTCTCAAAACTGCACCGGATGCCCAGTGTGTGTGCGCCCGCAATTGAGCCCGTCTTTCTCACCACTACAGCCATTATATATTCCGGACGGCTGTTTCCacattgttacaatacatatgATTGCAATGATGATAAATAAGGCTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109615 lncRNA upstream 471312 26091176 ~ 26094196 (+) True G87824
TU109567 lncRNA upstream 679805 25885446 ~ 25885703 (+) True G87786
TU109559 lncRNA upstream 695313 25858949 ~ 25870195 (+) True AMCG00021693
TU109541 lncRNA upstream 732520 25832454 ~ 25832988 (+) True G87765
TU109518 lncRNA upstream 812255 25753053 ~ 25753253 (+) False AMCG00021692
TU109760 lncRNA downstream 141069 26710217 ~ 26713476 (+) True G87939
TU109766 lncRNA downstream 151761 26720909 ~ 26737883 (+) True G87942
TU109790 lncRNA downstream 239109 26808257 ~ 26810867 (+) True G87961
TU109792 lncRNA downstream 243882 26813030 ~ 26817282 (+) True G87962
TU109837 lncRNA downstream 327577 26896725 ~ 26906365 (+) True G87993
AMCG00021708 mRNA upstream 32101 26525270 ~ 26533407 (+) True AMCG00021708
AMCG00021705 mRNA upstream 133203 26417306 ~ 26432305 (+) True AMCG00021705
AMCG00021706 mRNA upstream 194499 26335650 ~ 26371009 (+) True AMCG00021706
AMCG00021703 mRNA upstream 403793 26152460 ~ 26161715 (+) True AMCG00021703
AMCG00021702 mRNA upstream 417428 26130482 ~ 26148080 (+) True AMCG00021702
AMCG00021714 mRNA downstream 6257 26575405 ~ 26576697 (+) True AMCG00021714
AMCG00021712 mRNA downstream 10177 26579325 ~ 26596350 (+) True AMCG00021712
AMCG00021713 mRNA downstream 28473 26597621 ~ 26640105 (+) True AMCG00021713
AMCG00021715 mRNA downstream 71143 26640291 ~ 26643321 (+) True AMCG00021715
AMCG00021711 mRNA downstream 91871 26661019 ~ 26680085 (+) True AMCG00021711
TU109668 other upstream 368432 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 1199531 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 2387518 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 5329428 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 5334020 21229852 ~ 21231488 (+) True AMCG00021561
TU110128 other downstream 2209167 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 2491739 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 2809427 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 2809427 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 3698254 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile