RNA id: AMCG00021708


Basic Information

Item Value
RNA id AMCG00021708
length 393
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00021708
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26525270 ~ 26533407 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGCAGCACGCTGTTGAGAGAGAGatTACTACCCTGATCAATCACAAAGACAAACCAAAGAAATCTGAGAAAACACTTAGAGCCATTCAGAGAGTGGGCCAGGCTGTCAATGTGGCTGTGGGGAGGTTTGTCACTGTTGGGGAGGCCATCGCCACCGAGAATGAGGAACTGAAGGAGGAAATGAGCTTTGCCTGCTATGAGGCGCGGCGAGCAGAACAGGCCAGTGACAGCGCCCCCAGGATCGCACCAGCCACCTACCACCCCTGCGATATCCAGGAACCTGCAGCCGAGTCTGCCAGGAGTCTGCCCTCTGCTCAGGATATGGGCACCACCTGGGAGAGACGATCCCAGCGTTCTCCAGAGGCCTCTGGAGAGGAGCTGTCTGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109615 lncRNA upstream 431074 26091176 ~ 26094196 (+) True G87824
TU109567 lncRNA upstream 639567 25885446 ~ 25885703 (+) True G87786
TU109559 lncRNA upstream 655075 25858949 ~ 25870195 (+) True AMCG00021693
TU109541 lncRNA upstream 692282 25832454 ~ 25832988 (+) True G87765
TU109518 lncRNA upstream 772017 25753053 ~ 25753253 (+) False AMCG00021692
TU109703 lncRNA downstream 32101 26565508 ~ 26569148 (+) False AMCG00021707
TU109760 lncRNA downstream 176810 26710217 ~ 26713476 (+) True G87939
TU109766 lncRNA downstream 187502 26720909 ~ 26737883 (+) True G87942
TU109790 lncRNA downstream 274850 26808257 ~ 26810867 (+) True G87961
TU109792 lncRNA downstream 279623 26813030 ~ 26817282 (+) True G87962
AMCG00021705 mRNA upstream 92965 26417306 ~ 26432305 (+) True AMCG00021705
AMCG00021706 mRNA upstream 154261 26335650 ~ 26371009 (+) True AMCG00021706
AMCG00021703 mRNA upstream 363555 26152460 ~ 26161715 (+) True AMCG00021703
AMCG00021702 mRNA upstream 377190 26130482 ~ 26148080 (+) True AMCG00021702
AMCG00021704 mRNA upstream 403434 26120851 ~ 26121836 (+) True AMCG00021704
AMCG00021707 mRNA downstream 1686 26535093 ~ 26569143 (+) True AMCG00021707
AMCG00021714 mRNA downstream 41998 26575405 ~ 26576697 (+) True AMCG00021714
AMCG00021712 mRNA downstream 45918 26579325 ~ 26596350 (+) True AMCG00021712
AMCG00021713 mRNA downstream 64214 26597621 ~ 26640105 (+) True AMCG00021713
AMCG00021715 mRNA downstream 106884 26640291 ~ 26643321 (+) True AMCG00021715
TU109668 other upstream 328194 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 1159293 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 2347280 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 5289190 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 5293782 21229852 ~ 21231488 (+) False AMCG00021561
TU110128 other downstream 2244908 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 2527480 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 2845168 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 2845168 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 3733995 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile