RNA id: AMCG00021710


Basic Information

Item Value
RNA id AMCG00021710
length 3908
RNA type mRNA
GC content 0.48
exon number 22
gene id AMCG00021710
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26440655 ~ 26472215 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAGGTAACGCACAGAAGACAAAGATGGCGGCTCCCACCATTGAAACATGTTACGTTTCTTGTTGTGCGAATCGTACCCCCAATGCACTTTCCTGGGGGAGAGGAGGACTTGTTGCGTTCGGTACATGCAACTCTGTGGCTCTGTATCATCCGCAGAAAAGAACCGTCATTGCCACTCTGAATGGACACACCGGTAGAGTGAACTCTGTGCAGTGGGTGCACAGACATGACTGTGCTCCAGAAACAGAACTGGTGTCTGGAGGGTCTGATAATCAAGTCCTTGTGTGGGAGGTCCAGGATGGGAAGTTTGTCAAGTCTGGACAGTGTTGTGGCCACACTGGAGCGGTCAGTGCATTGGATGCTATTTACCTGGGAACTGCAGATGCCCCTCAGTTACTCATTGCCTCGACTGCCTCTGACTCGACAGTTAAAATCTGGATGAAGCAAGGCTCGCACACACAGTGCCTGCAGACATTATGCTTTGGAAATGGATTCATGATGGATGTTTCGCTGACACTGTTACCTCACAGCAATGTGCCCGTCCTGGCATGTGGAGGCGATGACTGTCGGGTCCACTTGTTTATTCGACAGAACGGACAGTTCGAAAAGGTGTTCTCTCTGCTCGGGCATGAAGACTGGATCAGAGGAGTGGAGTGGGCTGTCAAGGatgGGGAAATGTTATTAGCGAGTTGCTCCCAGGACTGTCTGATAAGAATGTGGAAAGTGTTTGCAAAGTCAGACAACATTATGGCCGATCACGATGTGGAGACGATCAAAATGAAAGAGGACGTCATTGTGGTGAAATTGGAGGaTTCTTTCACATCCTATGCTGTTACCCTTGAGACAGTCCTGGCAGGCCATGAAAACTGGGTGTATGGGGTGCACTGGCAGCCTCCTTTCCTTAAAGATGGCATTGTCCAACAGCCCATGCGTCTGCTGTCTGCATCGATGGATAAAACTGTGATCCTGTGGGGTCCGGATGAGGAGTCCGGCGTGTGGCTGGAGCAGGTGCGTGTTGGAGAGGTAGGCGGGAACACTCTTGGGTTCTACGGGTGTCAGATGAGTCCGGACGGATCTATGTTTATGGCCAGTGCTTTTCATGGTGCCCTCCATCTCTGGTACCAGGATTCAAACAAGGAGGGAGAGTGGCGTCCAGGGGTTGTGGTTTCTGGCCACTTCAATAGTGTTCAGGATCTCAGCTGGGATCCCAATGGCGAGTTCGTTGTGAGCGTTGGGTCTGACCAAACTACTCGGCTCTACACTCCCTGGAGAAGGAAGAACCACACCGAGGTGACCTGGCATGAAATCTCCAGACCTCAGATCCATGGCTATGACATGCAGTGCCTGGCAATGGTGGGACGTTTCCAGTTTGTTTCTGGAGCAGATGAGAAGGTTCTCCGGGTTTTCCGGGCTCCGCGGAATTTTGTGGAAAACTTCAGCAACATCTCGGGGGTTTCCCTGGAAAAGATGCTGTCCTCTAGTGACAATATTGACCTCCCAGAAGGAGCCAGTACGCCTGCTTTGGGTCTGTCCAACAAGGCTGTCTTCCAGGGTGATCTAACCCCTCAGAGCCCAGATGAGACAGGCCAGTTCAGCAGTTTGTCTGACCAGTACACCGAGTCCTACTTCCATCCCCTCGTCCTCACAGAGCCCCCCCCAGAAGATCATCTCCTGCAGAACACACTGTGGCCTGAAGTACAGAAactGTATGGCCATGGCTATGAAATGTTCTGCTTGGCCTCCAATAATGCCAGGACAGTCATCGCTTCTGCATGCAAGGCCTCCAAGCCTGAACATGCAACCATCCTTCTCTGGAGTACCTCAAGCTGGAAACTACTGCTGCGTCTCCCTCTGCACAGCCTGACTGTCACTCAGATGGCCTTCTCGCCTGACGACCGGTTCCTATTGGCCGTCTCCAGGGACAGAACGTGGTCGCTTTGGCGACAGCAAGAGACGGCCGGCACTGATTCAGAGCCTTGTTTTACTCTCTGTGGGAACACCGATAAGAGGAACTCAGTGATCATATGGGGAGATTGCAGCTCGGCTGAAAATTTAGAAGAAAACAAGCCAATGGTCATTCGGCCCTGTTCGTCAGTGCTGGATGTTGGAGATGCAGCCACAGCTGTGACCTTTAGCCCTGTAAAttacattCTGGCCGTGGGTCTGGAGTGTGGGAGGATTGTTCTGTACAAATGGAGGCCAGAGACGGATCCATCTGCAGGAACAGACTGGGTTAAATCTGTAGAAATGGATGATTTCCAGTGCCACACCCTGTCAGTCAAGAGGCTGCGCTGGAGACCGAGGGCCGGCAGGACTGGCCATGCAGAGGACAGCGGGTGGATACAGCTGGCCAGTGCCGGCGCTGACCACTTTGTCAAAATTTTCAACATCAATAGACTGGCTCTTTAGGTCTCGGGGCGGGGGTGGCAGAGGGGGACTAGTGACTCTCTTGCATGTGATGGACAGCGCACAGATGCATCTTTGACTGAGGTGCATTTTCCCTGTCTGCACTCGGCACTCGGATGGGCTCCTGGACACCTTTATCGCCTTTCCAATTTCCACCGCTGCTTTCTTCGGTATTATCCTTgcctttaataataatgataaaacaacaactgttGCAGGAGCAAACAAGACAGTGAAAAGGATagcagttgttgttttatgaTCTCATTAttagtgaaaataaatagtgcTCACAGGTGCGCACAAATTTGATAGACCTGCGGGGAGATTACTAGCAGTGTCTATATTGGATTGTGTGTGTAGTATTACTGGATCCTCGACTCTCATTTAAGCTGCACCTTGATTGAGCCAAGTCTTAATACAGCAGATTTGTTAGGtttaaaagaaattaaacatgatctacagctgcagtgaATAAGTCCAGTCTATGGAAGGTGCGTATAAGCAAGACAAGCCTGGACTTTGAGTTAGGGGAGGGGATGAACCGGAGGATAAAGCTGCAGCTTGTGTAATAACAGAATCATGGGGGAGATTGCTTCTGCCCTAGAACAGTGAAAGAATGAAAACCTTTTGGCACCCAATGTATTCAGCAATTCCTTTAGCCAACGTGAGCTCTATTGAAAACCCGAAAGAAACCAGAAGCCTGCCTTATTTGTCTCTCTTTCCTCTGCCTCTTAAATTCTTGTTGTTTAGAAGATGCCAGAAGACTGACGGATACAGGCCTGGCGCTGCAAGTCACGGATTAAAGAATTCCTCGAAGTTATCAgggttatttaaaacaaatctcggAGTACTTTGGATGCGGATGCCTAATAACGGGATTTGCGGATTAAAGCTGCAGGTTGCCAGTGTGTTATTTGATATGACACTAAAAGTGAAAGAATCAAGGGCACTTCACTCTCCCTGCGACTGCGATCCTCGTGAGGGGAGTCATTTGCATGTGCTGAAGAGGGTGTCATGGTAGTTTAGTAGTGCATCAAGCTCACAGGCGAGCAAAGCTTTCATCATACAACATCTTGcatttattgtagtttttttatggttttgtttgtttttttaatttgaataaatccCCTTCTTTGGCGAATTGTGTAAAGGTGCCTTTCTTTTTAAGTACCCTGTTCTTATTTTGTGCGAAAACCAAAAGGCACAGGGATGCAGGCTTAATCATTGTTCCTCACTCCATCTCTATTTCTGCTGTGGTTTTATATTGGTtaagtttgattttaaaagttcatTTGAATGGCTTGGAACTACAAAAGGTAAGGATAAAAATGTGTTGGTACACTGCGGCTCATTAGCAAGGATTTGCCAACACTGCATTACTGTGCCAATTGGCATACTTTTAACCTCCAAAAGAAGCATGGTCCGGATGCTTTGTTTGTGCCATGCATAATGTAAGATTGCAAATGTGTTTGTCCTATATGAGTCCTGATAGGAG

Function

GO: NA

KEGG:

id description
K11374 ELP2; elongator complex protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109689 lncRNA downstream 2762 26432144 ~ 26437893 (-) True G87884
TU109688 lncRNA downstream 21756 26418680 ~ 26418899 (-) True G87883
TU109687 lncRNA downstream 45476 26394951 ~ 26395179 (-) True G87882
TU109590 lncRNA downstream 542614 25896958 ~ 25898041 (-) False G87803
TU109591 lncRNA downstream 542614 25896958 ~ 25898041 (-) True G87803
TU109775 lncRNA upstream 201863 26674078 ~ 26701116 (-) False AMCG00021719
TU109817 lncRNA upstream 325876 26798091 ~ 26800715 (-) True G87980
TU109835 lncRNA upstream 420261 26892476 ~ 26895336 (-) True G87992
TU109836 lncRNA upstream 420261 26892476 ~ 26895336 (-) False G87992
TU109958 lncRNA upstream 937208 27409423 ~ 27409711 (-) True G88095
AMCG00021700 mRNA downstream 335264 26091227 ~ 26105391 (-) False AMCG00021700
AMCG00021701 mRNA downstream 350669 26083778 ~ 26089986 (-) True AMCG00021701
AMCG00021698 mRNA downstream 383798 26025398 ~ 26056857 (-) True AMCG00021698
AMCG00021699 mRNA downstream 464319 25962914 ~ 25976336 (-) True AMCG00021699
AMCG00021695 mRNA downstream 556423 25873891 ~ 25884232 (-) True AMCG00021695
AMCG00021709 mRNA upstream 91991 26564206 ~ 26566938 (-) True AMCG00021709
AMCG00021716 mRNA upstream 171539 26643754 ~ 26656084 (-) True AMCG00021716
AMCG00021719 mRNA upstream 228893 26701108 ~ 26718508 (-) True AMCG00021719
AMCG00021724 mRNA upstream 332825 26805040 ~ 26824298 (-) True AMCG00021724
AMCG00021723 mRNA upstream 427748 26899963 ~ 26919820 (-) True AMCG00021723
TU109676 other downstream 286280 26152105 ~ 26154375 (-) True G87871
TU109647 other downstream 343871 26091254 ~ 26096784 (-) True AMCG00021700
TU109596 other downstream 532650 25905444 ~ 25908005 (-) True G87806
TU109433 other downstream 1034117 25403650 ~ 25406538 (-) True G87674
TU108932 other downstream 3102171 23338251 ~ 23338484 (-) True G87263
TU109843 other upstream 439259 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 2309587 28781802 ~ 28783281 (-) True G88242
TU110186 other upstream 2596986 29069201 ~ 29071760 (-) True G88288
TU110330 other upstream 3257862 29730077 ~ 29742808 (-) True G88405
TU110482 other upstream 3865368 30337583 ~ 30424612 (-) True G88527

Expression Profile