RNA id: AMCG00021714


Basic Information

Item Value
RNA id AMCG00021714
length 486
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00021714
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26575405 ~ 26576697 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACGCCTACAAGACAACATTCAGCCTCTGTCTCCTGGCCACGCTGGTGCTGACGGTGACCTCTTCATTTAGTGGTGGCGGAGGATCCTATAGCTATGACCTTTCCAAGCAGTCTGACCTCACCAAGCTGTACAACTCCAAGGTGTATATTGCGGACAGAATGCGGAGACCACTGGAAGGGACTTCTTTCATGTTTGGGAAATTAAGTCACAGTGGAGtcagAGTAACACTGGCAGATGGAACCAAGTGGCTGATTCATAAAGGCAATGACTTTGGGATCAGTTCCCAGACAGTGGTGGTTGATGCTCGCCATATGTCTAGCAGTTGGAAGGCAAtttttgtttctcttgaatTTCAGATCATCGAAACAAAGAATTTCCAAGGCTCAAAAAGAGTTACAGACTTTGTCAAAGCTGGGGGCACTGACTACAGTCTCATCTTTGACAATTGCCATGATGGGGCTGATAGAATGATGGATGGTTGA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109703 lncRNA upstream 6257 26565508 ~ 26569148 (+) False AMCG00021707
TU109615 lncRNA upstream 481209 26091176 ~ 26094196 (+) True G87824
TU109567 lncRNA upstream 689702 25885446 ~ 25885703 (+) True G87786
TU109559 lncRNA upstream 705210 25858949 ~ 25870195 (+) True AMCG00021693
TU109541 lncRNA upstream 742417 25832454 ~ 25832988 (+) True G87765
TU109760 lncRNA downstream 133520 26710217 ~ 26713476 (+) True G87939
TU109766 lncRNA downstream 144212 26720909 ~ 26737883 (+) True G87942
TU109790 lncRNA downstream 231560 26808257 ~ 26810867 (+) True G87961
TU109792 lncRNA downstream 236333 26813030 ~ 26817282 (+) True G87962
TU109837 lncRNA downstream 320028 26896725 ~ 26906365 (+) True G87993
AMCG00021707 mRNA upstream 6262 26535093 ~ 26569143 (+) True AMCG00021707
AMCG00021708 mRNA upstream 41998 26525270 ~ 26533407 (+) True AMCG00021708
AMCG00021705 mRNA upstream 143100 26417306 ~ 26432305 (+) True AMCG00021705
AMCG00021706 mRNA upstream 204396 26335650 ~ 26371009 (+) True AMCG00021706
AMCG00021703 mRNA upstream 413690 26152460 ~ 26161715 (+) True AMCG00021703
AMCG00021712 mRNA downstream 2628 26579325 ~ 26596350 (+) True AMCG00021712
AMCG00021713 mRNA downstream 20924 26597621 ~ 26640105 (+) True AMCG00021713
AMCG00021715 mRNA downstream 63594 26640291 ~ 26643321 (+) True AMCG00021715
AMCG00021711 mRNA downstream 84322 26661019 ~ 26680085 (+) True AMCG00021711
AMCG00021717 mRNA downstream 110403 26687100 ~ 26700241 (+) True AMCG00021717
TU109668 other upstream 378329 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 1209428 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 2397415 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 5339325 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 5343917 21229852 ~ 21231488 (+) False AMCG00021561
TU110128 other downstream 2201618 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 2484190 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 2801878 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 2801878 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 3690705 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile