RNA id: AMCG00021716


Basic Information

Item Value
RNA id AMCG00021716
length 2408
RNA type mRNA
GC content 0.38
exon number 8
gene id AMCG00021716
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26643754 ~ 26656084 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGACAACTTAACAACATTAAACACGGAACAGTATAGCTTTAATTAGTCATGAAGCTGCGCTGGTCACAGTCCTTACGGTCTCTAGATGGACAGGAAACCAGTTTATAAATGACATATAATCCAGAACAAACTGGTAAATTCTGATGTAACTGGAAAAACACCTGAATGAGCACTTTATAAGtagAGCACTTGCACCTGATGCAACAACATACTAATTCAACATGGGGAATGTAATGAGGACCCAAGCTCCTGAAACTGAGAACGAAAATAGGACACTCTTCACAGACCCAAGACTGAAAGTGGTGGAAAATGACACACTTGTCGTGCTTCAAGATTACCCCTCTCCGGATATCAGTGAGCCCATCTTCAGGATAGGGGAGAAGCTGCGAGTTCTGTCTGAagAAGGCTGCTGGTGGAAAGTTATTTCTGTTGTCACAggaaatgaaaattacattCCAAATAACCATGTAGCAAAAGTCTACCATGGCTGGTTATTTGAAGGAGTAGTGAGACACAAAGCTGAAGAACTACTGAAGCTTTCAGAAAACAGAGTTGGCTCATTCATGATACGAGAAAGCACAACCGAAAGAGGTGTGTACTCCCTTTCAGTCAGGCACAGAACTATAAAGCATTATCGAATATTTCGCTTACCCAACAACTGGTACTACATCTCTCGTCGCCTCACTTTCCAATGCCTAGAAGACCTAGTAAACCACTACTCTGAAATGGCCGATGGCCTGTGCTGTGTCCTCACCAGTCCGTGCCTCACGTACAGCAATAACAACCTCAACCTGACAAACCAGCCTCCCCCAGTAGTGATGAGACGCAACAAGTTTGACTGGACCAATGTTGAAAGATCAGATATAATAAACCAGGGTGCACaaagtcaccaagaaaacaaagactCTTTAATAAGCTTTGGGGTGCGGAACAGCCTCCTATCCTACCTGTCCCTCACGGGCTCCACAGGAAATACTTCATACAAGAAAAGCCGAAAGAAAAAGAGCAAATCTGTTTACGCGGTCACAGTCCCCAGCACTGATCCCGAAGACTTGCCTATTGACGAGGAATACTATGAACCACAAATATAACATCTACTTTTAACTTGTTTTACAGTAAGGTGGTTTTGCGAAATAatgttctattatttttttgtacatataATTAATAGCCAAGTGGAATCAGCTAAATCCTGCTCCCATTGaacatatttcaataaattatattcataGATATATCACATTATCACAGTATTATTCTTTAACCTCAAACAAGTAATGAATGATAggtgtattttatatgatttattatttgaatctcCCTAGCCTGTGAACACAGCACTCCCAAGCACTACGACTTATTTTTATCTTGTATGGAGAACATCCTCAGAGAAATTCAATCTAATTTATTTGtcctatatttaaattataaacaaaaagtaTTATACCTGTAAGACATATTGATCATGATGCACTGCAAATATATCtaaaggtttctttttttacactTGTGCATTTTGTAACTTCTTTAAAATCATACTAtgaacaacaacataaaatgatgtataaaataagcaaaaccaCATAAGCAAGATGTATTAGAATCACTCATTAAATATTATTCGTGTGGATTTAAGATCAATGACATGGGTGGGACATTTCCTAGCCTGTTTAAAGGTGGCACTCAGAATGATGTGGCACATGGGGAGCTACGGGACCCGGATTTTTGTTGCTGCAATAGTCAGTCCCAATGAATGATGCTCATTCTTGAGCGAAGTGGAACAATTTAACCTGCTGGTGACCTCCTTATAGCTAGGAGGTGAAAATCAGCTAAGACTTAAGGGTTCACGGAGAAAAGGTGGCAGTGGGCAAACCACAGATCATCACTTATGATCCCTGGAATAGGCAAACACTCTGATGAAATGAAAGTGGCTTTGTGGACCGAAAAGAAAAATCTCAAACTCTAAACTCCTCCTACATTGTCATAGTTACAGAGCAAAGAGCTACCTTCAGTGTCAGCACAACAGCCATTTCATCTAGTCTGATTGGAAATGAAACATGTTATGCTACCTGCAACTTGCAAAGGGAACTGTTTAAGAAAATGAGCTGGTTCAAACTACTTTTTCTGTTTGCAAATCTTTAGCTTTATCTGTTATGTGTTAAAATGATACAAAAGCTGTTATATTATGTAGCATGGGCTCCTATGGTATGAGTCTATGTAGTTCTTTGAATACCTGATGTATCAATGCATTAGCTTTGTGAAGCTTAATGGCTTGATTGTTTTTGTAAGGTTAGTAGTAATGTATCAGAATCAGAAAGAGAAACTGTAGGATACTGAAAACCAGAAATGAATGACAGCCACTTTTCATgttctaaataaaatgtaataaaaaaaaatgtttgctggT

Function

GO: NA

KEGG:

id description
K23698 SLA; src-like-adapter

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109689 lncRNA downstream 205861 26432144 ~ 26437893 (-) True G87884
TU109688 lncRNA downstream 224855 26418680 ~ 26418899 (-) True G87883
TU109687 lncRNA downstream 248575 26394951 ~ 26395179 (-) True G87882
TU109591 lncRNA downstream 745713 25896958 ~ 25898041 (-) True G87803
TU109775 lncRNA upstream 17994 26674078 ~ 26701116 (-) False AMCG00021719
TU109817 lncRNA upstream 142007 26798091 ~ 26800715 (-) True G87980
TU109835 lncRNA upstream 236392 26892476 ~ 26895336 (-) True G87992
TU109836 lncRNA upstream 236392 26892476 ~ 26895336 (-) False G87992
TU109958 lncRNA upstream 753339 27409423 ~ 27409711 (-) True G88095
AMCG00021709 mRNA downstream 76816 26564206 ~ 26566938 (-) True AMCG00021709
AMCG00021710 mRNA downstream 171539 26440655 ~ 26472215 (-) True AMCG00021710
AMCG00021700 mRNA downstream 538363 26091227 ~ 26105391 (-) False AMCG00021700
AMCG00021701 mRNA downstream 553768 26083778 ~ 26089986 (-) True AMCG00021701
AMCG00021698 mRNA downstream 586897 26025398 ~ 26056857 (-) True AMCG00021698
AMCG00021719 mRNA upstream 45024 26701108 ~ 26718508 (-) True AMCG00021719
AMCG00021724 mRNA upstream 148956 26805040 ~ 26824298 (-) True AMCG00021724
AMCG00021723 mRNA upstream 243879 26899963 ~ 26919820 (-) True AMCG00021723
AMCG00021725 mRNA upstream 290088 26946172 ~ 26946690 (-) True AMCG00021725
AMCG00021731 mRNA upstream 348397 27004481 ~ 27009904 (-) True AMCG00021731
TU109676 other downstream 489379 26152105 ~ 26154375 (-) True G87871
TU109647 other downstream 546970 26091254 ~ 26096784 (-) True AMCG00021700
TU109596 other downstream 735749 25905444 ~ 25908005 (-) True G87806
TU109433 other downstream 1237216 25403650 ~ 25406538 (-) True G87674
TU108932 other downstream 3305270 23338251 ~ 23338484 (-) True G87263
TU109843 other upstream 255390 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 2125718 28781802 ~ 28783281 (-) True G88242
TU110186 other upstream 2413117 29069201 ~ 29071760 (-) True G88288
TU110330 other upstream 3073993 29730077 ~ 29742808 (-) True G88405
TU110482 other upstream 3681499 30337583 ~ 30424612 (-) True G88527

Expression Profile