RNA id: AMCG00021733


Basic Information

Item Value
RNA id AMCG00021733
length 594
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00021733
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27121331 ~ 27123223 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAAGGTCCTTCCTGGTAAAAAAGGTCAAGCTTGACGATTTCTCATCCTCTGATCTCGAAAGCTCCTATGGCACATCCAGGACCGACCTCAGTGTGCGGCTTCACGACAAAGGATACATTAGAGACTACATCACCCCGTCTGTGTACGATGGTGAGAGCGACAGTGCCATTAAAGTGCCCTCTCCTGAACCCATCTACGATGGCATGCACGGGGACTACGGAGCACCGGATTCAGACCAGCCAGACAGCCCCCAGTCGGAGATCACATCTGGTTACATCAATGGAGATAATGCCGTGAGTGAAGGTTACACAGTAGATGCCTTCTTCATCACGGACGGAAGGTCAAGAAGGAAAGTCATCAGCAGCCCCAGGACCATACAACGCCACACTTGCAATGAGTGTGGAAAAACCTACGCCACGTCTTCCAACTTAAGCAGGCACAAGCAAACCCACAGGAGTCTGGACAGCAAGATGGCCAAGAAATGCCCGACCTGTGGGAAGACCTTCGCCCTGAAGTCCTACCTGAACAAGCACTACGAGTCCGCCTGCTTTAAAGGCGCGTTCTCCCCGCTGAGTCCACTTGAAGCATGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109877 lncRNA upstream 57380 27063563 ~ 27063951 (+) True G88027
TU109876 lncRNA upstream 59241 27061819 ~ 27062090 (+) True G88026
TU109875 lncRNA upstream 60942 27060182 ~ 27060389 (+) True G88025
TU109874 lncRNA upstream 63720 27057374 ~ 27057611 (+) True G88024
TU109837 lncRNA upstream 214966 26896725 ~ 26906365 (+) True G87993
TU109893 lncRNA downstream 15604 27138827 ~ 27139443 (+) True G88043
TU109895 lncRNA downstream 72429 27195652 ~ 27195870 (+) True G88045
TU109938 lncRNA downstream 285636 27408859 ~ 27409687 (+) True G88076
TU110017 lncRNA downstream 469407 27592630 ~ 27594570 (+) True G88145
TU110023 lncRNA downstream 497133 27620356 ~ 27621880 (+) True G88151
AMCG00021727 mRNA upstream 67265 27026147 ~ 27054066 (+) True AMCG00021727
AMCG00021728 mRNA upstream 96424 27011922 ~ 27024907 (+) True AMCG00021728
AMCG00021730 mRNA upstream 109421 27010869 ~ 27011910 (+) True AMCG00021730
AMCG00021729 mRNA upstream 118761 27001117 ~ 27002570 (+) True AMCG00021729
AMCG00021726 mRNA upstream 142432 26954157 ~ 26978899 (+) True AMCG00021726
AMCG00021734 mRNA downstream 138616 27261839 ~ 27287320 (+) True AMCG00021734
AMCG00021737 mRNA downstream 171866 27295089 ~ 27315993 (+) True AMCG00021737
AMCG00021739 mRNA downstream 208392 27331615 ~ 27332691 (+) True AMCG00021739
AMCG00021740 mRNA downstream 274346 27397569 ~ 27405275 (+) True AMCG00021740
AMCG00021741 mRNA downstream 389221 27512444 ~ 27526967 (+) True AMCG00021741
TU109668 other upstream 924255 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 1755354 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 2943341 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 5885251 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 5889843 21229852 ~ 21231488 (+) False AMCG00021561
TU110128 other downstream 1655092 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 1937664 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 2255352 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 2255352 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 3144179 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027507 True 1562 mRNA 0.55 2 NC_007130.7 1184878 ~ 1186928 (+)
grasscarp (Ctenopharyngodon idella) CI01000319_01114110_01115507.mRNA True 2517 mRNA 0.47 2 CI01000319 1113574 ~ 1116648 (+)