RNA id: AMCG00021734


Basic Information

Item Value
RNA id AMCG00021734
length 3884
RNA type mRNA
GC content 0.40
exon number 17
gene id AMCG00021734
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27261839 ~ 27287320 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCAAATAAACCTTTCTTAAATCTCTTGAGACGATGAAACTTCAACTCCCAGCATTCCCGGTTTTCCCATTGAGACAAGTGAACTACATCTCCCATGGTCAACGCGACTTTTCGCCACACTGCCTGTGGAGGATGTCTTGGCAACAGAGAAGGGGTTGGTGAAAGGCTACCCCTTTGAGTAGCCAAGAGACGGGTTGAGCTGCCATCCAGTAAACTTGAGGACAACTTTCATTTATACACCAAGCTTTGAATGCCTCCTCCAGAAAATGGGAGATAAACACGAGAAAGGGCCTGCGAGCCGTAAAAGGAGAACCACCATCTCGGGTGGATCGGGGTCAAGTTTGAGAGCGAACGGTAGCAAGTCTGGGGGAGAAACTATTGATACAAAgtacagcagcagcaataaCAATGCGAGAGGGAAAGAGGAAAAGATACAAGATGCGTCCGCGGTATCGagaaaggagaaggagaagggaaAGCCTGAAAACAACTATGACAGACTCAGTTGCCACAAGCTACAGGAGTCCCTGCTCAGCTCAGCCAGTGGCTACAGCAACTACAGGGGGATACTGAACTGGTGTGTTGTCATGCTGGTCTTGAGCAATGCACGTCTTTTCCTAGAGAACCTAATAAAGTATGGTATATTAGTGGACCCAATCCAAGTGGTTTCACTGTTCTTAAAGGACCCTTATAGCTGGCCAGCTCTGTGCCTTGTAATTGtgtcaaatgtatttatatttgcagCATTGTACACTGAAAGAAGGCTATCAGTGGGCACCTTTTCAGAGAGTGTGGGATCCTTTATCCACTTTGTCAGCCTGTCTACCATCCTGTGTTTCCCAGTTGCTGTCGTCCTAATGGTTAATTCTATGACCCCAGttgGTGCAGTTTTTGCACTTTCAGTCTACACTATCCTCTTCCTCAAGCTGTATTCCTATAAGGATGTGAATAAATGGTGCAGGGAGATCAGGCAGGCCAAGGCCCGCACCCTAGCCCGATCCCAATCCTGTCCAACGGTGCAGAAGTCGAATGGTTCTGCAGTGCAAGCTCATGTGTCCTACCCAGGGAATCTCACACACCGAGATCTGTACTACTTCCTTTTCGCTCCTACCCTCTGCTATGAATTAAATTTCCCTCGCTCTCCTCGGATACGCAAGCGCTTTCTGCTCAGGAGGCTTTTTGAAATGctATTCTTCATACAGTTGTTGGTGGGATTAATACAGCAGtggaTGGTTCCAACTATTCAAAATTCAATGAAGCCATTTAAGgATATGGACTATTCGAGAATGATTGAGCGCCTCTTGAAGCTTGCTGTCCCCAATCACTTAATCTGGCTGATATTTTTCTATTGGTTTTTCCACTCCTCCATGAATTTTGTAGCTGAGCTCATGCAGTTCGGAGACCGGGAGTTCTACAGAGACTGGTGGAACTCTGAAACAGTCACATACTTCTGGCAGAACTGGAATATTCCTGTCCACAAATGGTGTTTACGCCACTTTTACAAACCTATACTGAAGAGAGGCGCTAGTAAATGGGTGGCCCAGACAGCAGTATTCCTGGCTTCAGCTTTCTTTCATGAGTACCTTGTCAGTGTTCCTCTGAAGATGTTCCGGCTGTGGGCGTTCATGGGCATGATGGCTCAGATTCCTCTGGCGTGGTTCGTTGGCCGATTTCTAAGAGGCAACTATGGCAACGCAGCTGTGTGGATCTCCCTCATCATTGGCCAGCCCGTGGCGGTGCTAATGTACGTCCATGACTACTACATCCTGAATTATGAGGAGACCCCGGCTGCAAGCGTTTGACCGTAAGACAGAGCAAACCCCAAGAGGCCTGACAGTTACTGGTTCAAGAATGACAATCccttgtgtgtatatatttttttcttttaaatgaggGGAACAACAAAAGTTTATACATCTTGAAAGAAATTGAGATTTAGAGGGGAAACATGGTACATCCCTATAGTATTACCTGAATACAATGAGGATCTCTTTGGCAACACCAGTAAGAGGGAAATCATTTGCCGTCCAGTATCAAGCTGTCTTTACGAGCAGGATTGTGATTCTGTTCCCTCCATAGGAACTTGCTCACTGTGGTATTGTCTTTACTGATACTCTGCACTTTACTATTGCAGACGCTGGGCtcttaatgtttttgtgtgattGGTAACTTTGAAACACTGCCTAGTCAAAGCAAGATTTCAAGACGTTTTTatgcctttttcatttttttacttaaGAATGACGCTCTCCAGTAGAATCTGATCAATGCAAGTGTCCTCATTGAACGTATCATCTTGgcaatatcttttttttgtttgtattggcTTCTCATGTCAACGGGTCATCTTTGATGCCTTTTAAGATGGCCAGATGTGGTCTTTCAGGGGATTTTATTAAAAACGGTTCTTAGAAATATTAACTGCAAACTAATTCTGCTTTTCATAAATGTGTATTGTGGGTTGGTTTTGAGGAAATTTCTAGTCAATTTTGTGGTGTCCTTTAGTTTCAGTTGAGATCCTCTTAGCAATTAGACTTCAAACTTCAAACTCTGAAGGCAGAGTTTTAGAATAATCTCTGTGTCAGATCTCTAAATTTAAGATGCTGAGTGTTTTGGAAGTATACATTGTGATCATGTCTCATTGAACTTGTTAAGAGTGCTTACACAgtttaaacacatgaaaaagCACCTTATAGACCAGCCACGGTCACagccttttcattttcctaTTATATGGGGAGAATTGAAACATGTGTTCAGTATTCAGTATAGCTCATGAATCTGCTATACTGTAACTCTTAACTTGCcaaataataaagtgaaaaagCATCGTCTACCTTAATTACCTTCATGTTAATATGTACCGCTGTGGAAATATCTGAACAATTTTAAACAAGTACATTTTCTGGCAAACGAAAGTTTCTCAGAAGAGGTTTCCTTCTCggcagcatttttgttttgttttgtctaaatTGTCGATACTGTAACATGTTTGTATTCAATCTAGGCTTTTGGGTATTTACTGCTGCATTAATaatattggtttaaaaaatattgtggaTATACAGTggacaatgttttgatttattctccGCCCCCCAATACTGTACTGAGTATTGTCACTCATGGAGTGTCTGGCAGGGTAGACAGATCTACTCACATGATTTCTTTCAGGTAATGTACAGTATTCAAAGGCATTTATAAGAAAATGTGCATTCAGGGATGCAGATGCTCCAGAGTTACTTTGGATTCTCATCAGAAGACAAGCAGAATGTGTCagtcacataaataaatattttactggtTTCATAAGTGAGATAACATACTGCTATTGTAGTATTTAAAacgtttaatttagttttgaaaaagggattttttttatttgatttttttttatatatatataaaaaaaaatgtttttgttgtaagAATCTACTTTAACCTTCAAGGTACAACTAGTggtacatttaaagaaaatgcataaagGGCCGACAGGGAGGAGACATTTGAATTTCTCCTGTTGATGGATCAGGATGTTCCAGAAAATACctgttttgtgatttgttttgtttttcgtaATGGAAGTGttttgtacatttcaatacttgccgttttatttttcagtgtgtttagCTACCATTGTGTTAGCTAATGtgcttgtaaaataaaagcttGCCTTCTGAATTTTGTTAACATTTCTTTCAATTAGTGTGTCCCTAGCCAATGGAGAAATTTTTCAAATAAAGATAGAGATAGTTTACATGTAATGCACAgtaaacaacttatttaaattaataagtgAATGTTTGCAAGGCCTTTTGTTTCAACCAAATGGGTTTTTCCATTAATGAATTCTCAGCTCATCTGttttagcaaaataaaac

Function

GO: NA

KEGG:

id description
K11155 DGAT1; diacylglycerol O-acyltransferase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109895 lncRNA upstream 65969 27195652 ~ 27195870 (+) True G88045
TU109893 lncRNA upstream 122396 27138827 ~ 27139443 (+) True G88043
TU109877 lncRNA upstream 197888 27063563 ~ 27063951 (+) True G88027
TU109876 lncRNA upstream 199749 27061819 ~ 27062090 (+) True G88026
TU109875 lncRNA upstream 201450 27060182 ~ 27060389 (+) True G88025
TU109938 lncRNA downstream 121539 27408859 ~ 27409687 (+) True G88076
TU110017 lncRNA downstream 305310 27592630 ~ 27594570 (+) True G88145
TU110023 lncRNA downstream 333036 27620356 ~ 27621880 (+) True G88151
TU110022 lncRNA downstream 339732 27627052 ~ 27631654 (+) True G88150
TU110028 lncRNA downstream 345595 27632915 ~ 27636756 (+) False AMCG00021745
AMCG00021733 mRNA upstream 138616 27121331 ~ 27123223 (+) True AMCG00021733
AMCG00021727 mRNA upstream 207773 27026147 ~ 27054066 (+) True AMCG00021727
AMCG00021728 mRNA upstream 236932 27011922 ~ 27024907 (+) True AMCG00021728
AMCG00021730 mRNA upstream 249929 27010869 ~ 27011910 (+) True AMCG00021730
AMCG00021729 mRNA upstream 259269 27001117 ~ 27002570 (+) True AMCG00021729
AMCG00021737 mRNA downstream 7769 27295089 ~ 27315993 (+) True AMCG00021737
AMCG00021739 mRNA downstream 44295 27331615 ~ 27332691 (+) True AMCG00021739
AMCG00021740 mRNA downstream 110249 27397569 ~ 27405275 (+) True AMCG00021740
AMCG00021741 mRNA downstream 225124 27512444 ~ 27526967 (+) True AMCG00021741
AMCG00021742 mRNA downstream 264765 27552085 ~ 27583265 (+) True AMCG00021742
TU109668 other upstream 1064763 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 1895862 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 3083849 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 6025759 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 6030351 21229852 ~ 21231488 (+) False AMCG00021561
TU110128 other downstream 1490995 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 1773567 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 2091255 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 2091255 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 2980082 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile