RNA id: AMCG00021738


Basic Information

Item Value
RNA id AMCG00021738
length 1124
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00021738
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27287252 ~ 27291996 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATATTATATCAGACCATAACCACGGAACGGAAAGCGCTGCGGCGGCGGGTTTGGCTGCCACACGGAGCACAAGTGCGCACGGAGCGGAAGGGGCGGCGGGGCTTTGAATCGGGGAGCTTTATTTCATGGTTGTCGCTGGTGTTGTTTGGATCCGACTACAGTGACGGTGTGGGAGAGAAGAGCAGTTTGGTAACAAGTCGGCGAAAGGAGAAGAAGATGTTTAAAAACACGTTCCAGAGTGGGTTCTTGTCCATTCTGTACAGCATCGGGAGCAAACCTCTTCAGATCTGGGATAAAAAGGTGAGAAATGGTCACATTAAACGGATAACGGACAACGACATTCAGTCACTGGTGTTGGAAGTGGAAGGCACTAATGTCAGcACAACATATATAACATGTCCAGCTGATCCCAAGAAAACTTTGGGAATTAAACTTCCGTTTCTGGTTATGATCATCAAGAATTTAAAGAAGTATTTCACCTTTGAAGTCCAGGTGTTAGATGACAAAAATGTCAGGCGGCGTTTTCGGGCAAGCAATTACCAGAGCACCACACGTGTGAAACCATTCATCTGCACCATGCCTATGAGGCTTGATGACGGCTGGAACCAGATTCAGTTCAATCTGTCGGATTTCACTCGTCGAGCCTACGGCACCAATTACATCGAGACGCTCCGAGTACAGattcaTGCAAATTGCCGTATCCGAAGGGTATATTTCTCAGATAGACTGTATTCAGAAGATGAACTCCCAGCAGAATTTAAACTTTATCTACCTGTTCAGAATAAAGCAAAGCAGTAGGACCTATGCAGCAACGTGTCACTTCATTCCAGACTTTAATTTATCTTCAGATTAAGACCCCTACAATGATACAAGATGATGGTTTCGATTTCAAACTGTGATTGTCTCCGTTTTACCCTATGTATATCCTGTGCACAATAAaagttttgtatataaaaaaaacaactaaaaattGCTGTTTGTAGgtttaaacatacaaattaatccagtaacattataattaacttaacagggaaaaatacttattttaataggttttattttgctaaaaCAGATGAGCTGAGAATTCATTAATGGAAAAACCCATTTGGTTGAAACAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109835 lncRNA downstream 391916 26892476 ~ 26895336 (-) True G87992
TU109836 lncRNA downstream 391916 26892476 ~ 26895336 (-) False G87992
TU109817 lncRNA downstream 486537 26798091 ~ 26800715 (-) True G87980
TU109775 lncRNA downstream 586136 26674078 ~ 26701116 (-) False AMCG00021719
TU109689 lncRNA downstream 849359 26432144 ~ 26437893 (-) True G87884
TU109958 lncRNA upstream 117427 27409423 ~ 27409711 (-) True G88095
TU110025 lncRNA upstream 327824 27619820 ~ 27620091 (-) True G88153
TU110026 lncRNA upstream 335124 27627120 ~ 27631668 (-) True G88154
TU110029 lncRNA upstream 342908 27634904 ~ 27636720 (-) True G88157
TU110070 lncRNA upstream 811334 28103330 ~ 28103666 (-) True G88190
AMCG00021735 mRNA downstream 25901 27236574 ~ 27261351 (-) True AMCG00021735
AMCG00021736 mRNA downstream 84947 27196092 ~ 27202305 (-) True AMCG00021736
AMCG00021732 mRNA downstream 223181 27054043 ~ 27064071 (-) True AMCG00021732
AMCG00021731 mRNA downstream 277348 27004481 ~ 27009904 (-) True AMCG00021731
AMCG00021725 mRNA downstream 340562 26946172 ~ 26946690 (-) True AMCG00021725
AMCG00021743 mRNA upstream 124274 27416270 ~ 27440262 (-) True AMCG00021743
AMCG00021744 mRNA upstream 292424 27584420 ~ 27587139 (-) True AMCG00021744
AMCG00021747 mRNA upstream 346586 27638582 ~ 27640909 (-) True AMCG00021747
AMCG00021755 mRNA upstream 923826 28215822 ~ 28218715 (-) True AMCG00021755
AMCG00021756 mRNA upstream 942644 28234640 ~ 28239140 (-) True AMCG00021756
TU109843 other downstream 367408 26911474 ~ 26919844 (-) False AMCG00021723
TU109676 other downstream 1132877 26152105 ~ 26154375 (-) True G87871
TU109647 other downstream 1190468 26091254 ~ 26096784 (-) True AMCG00021700
TU109596 other downstream 1379247 25905444 ~ 25908005 (-) True G87806
TU109433 other downstream 1880714 25403650 ~ 25406538 (-) True G87674
TU110132 other upstream 1489806 28781802 ~ 28783281 (-) True G88242
TU110186 other upstream 1777205 29069201 ~ 29071760 (-) True G88288
TU110330 other upstream 2438081 29730077 ~ 29742808 (-) True G88405
TU110482 other upstream 3045587 30337583 ~ 30424612 (-) True G88527
TU110615 other upstream 3585852 30877848 ~ 30888212 (-) True AMCG00021820

Expression Profile